View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13501_high_7 (Length: 428)
Name: NF13501_high_7
Description: NF13501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13501_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 414
Target Start/End: Complemental strand, 1527893 - 1527494
Alignment:
| Q |
15 |
atcagcatcagtcatcaaactttacatactgtgtttcaaaaagtgtccaatacttctaaacttcaaaagaaaggtatctcaaagtctagttttactatga |
114 |
Q |
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| T |
1527893 |
atcagcatcagtcatcaaactttacatactgtgtttcaaaaagtgtccaatacttctaaacttcaaaagaaaggtatctcaaagtctagttttactatga |
1527794 |
T |
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| Q |
115 |
acttagtctcttgtactgaaaatttaattaactaatttacctaaaatgtcatgcttatgatgcttaagaagtaaaattctgaaattcaatacacttgata |
214 |
Q |
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| T |
1527793 |
acttagtctcttgtactgaaaatttaattaactaatttacctaaaatgtcatgattatgatgcttaagaagtaaaattctgaaattcaatacacttgata |
1527694 |
T |
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| Q |
215 |
taaaacaggtaaaagacaattgcaaatagtggcattacctcgactctttttaacatgtgagggtcaatatcaatatggtgttccccaactatataatcaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1527693 |
taaaacaggtaaaagacaattgcaaatagtggcattaccttgactctttttaacatgtgagggtcaatatcaatatggtgttccccaactatataatcaa |
1527594 |
T |
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| Q |
315 |
ccattttgaccgacatttgttcatgtgacctacaaagtacaaaatacaacacattgaacacaacactttacgaataaccaaataaaacatagtacttttt |
414 |
Q |
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| T |
1527593 |
ccattttgaccgacatttgttcatgtgacctacaaagtacaaaatacaacacattgaacacaacactttacgaataaccaaataaaacatagtacttttt |
1527494 |
T |
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