View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13501_low_5 (Length: 552)

Name: NF13501_low_5
Description: NF13501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13501_low_5
NF13501_low_5
[»] chr4 (2 HSPs)
chr4 (11-364)||(16864578-16864928)
chr4 (369-532)||(16862844-16863007)
[»] chr3 (2 HSPs)
chr3 (30-241)||(20543659-20543870)
chr3 (372-532)||(20541795-20541956)
[»] chr8 (2 HSPs)
chr8 (30-241)||(40611432-40611644)
chr8 (372-532)||(40613366-40613526)
[»] chr7 (3 HSPs)
chr7 (98-352)||(3037246-3037497)
chr7 (373-454)||(3036173-3036256)
chr7 (450-532)||(3035332-3035414)
[»] chr6 (2 HSPs)
chr6 (372-532)||(17535305-17535465)
chr6 (372-529)||(28106645-28106802)
[»] chr5 (2 HSPs)
chr5 (378-529)||(20528473-20528622)
chr5 (23-223)||(20530357-20530557)
[»] chr1 (1 HSPs)
chr1 (461-532)||(23940391-23940462)
[»] chr2 (1 HSPs)
chr2 (432-481)||(45341806-45341855)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 16864928 - 16864578
Alignment:
Q  11 atcatcaagaggaggcatctcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgttgaacttgattgagtg 110  Q
    |||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16864928 atcatcgagaggaggcatctcaggatcaatttgatttacttgctcatcagttgtgaattctataacatcatcatcaattagtgttgaacttgattgagtg 16864829  T
Q  111 ttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgtagcttataagctt 210  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16864828 ttttcattaccattctagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgtagcttataagctt 16864729  T
Q  211 ttgattcttcactcaaaccaagcagaatacacctagtactactcttatcatctaacttcttcctctgagagtatgacacatgaacataagaaatacatcc 310  Q
    || |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16864728 tttattcttcactcaaaccaagcagaatacacctag---tactcttatcatctaacttcttcctctgagagtctgacacatgaacataagaaatacatcc 16864632  T
Q  311 caaaattctaaaatactttactgaaggttgcacaccactccacatgaacatatc 364  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16864631 aaaaattctaaaatactttactgaaggttgcacaccactccacatgaacatatc 16864578  T

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Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 369 - 532
Target Start/End: Complemental strand, 16863007 - 16862844
Alignment:
Q  369 gcggaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaaga 468  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  16863007 gcggaaccttgatacttcctacgcattgcatcccaaatatccttagctgaatctttaaccaatctagtttccatgattgttctatcaatggattgaaaga 16862908  T
Q  469 gatagtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 532  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  16862907 gatagtttttcaccttaagatcaagaagtttactatcctttgcagctttttcttgttctggtgt 16862844  T

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Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 20543870 - 20543659
Alignment:
Q  30 tcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgttgaacttgattgagtgttttcattatcattccagt 129  Q
    ||||| ||| ||||||||| ||||||||||||||| |||||||| ||||||||||| || |  ||||||||||||||||||||||||||  |||||||||    
T  20543870 tcaggttcagtttgatttactggctcatcagttgtaaattctatcacatcatcatctatcaaggttgaacttgattgagtgttttcattcccattccagt 20543771  T
Q  130 tccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgtagcttataagcttttgattcttcactcaaacc 229  Q
    |||||||||||| ||||||||||| |||||||||| |||| |||||||||||||| || || ||||  | ||||||||||||||||||||||||||||||    
T  20543770 tccatccttgtgtttcttcaaatacaacatccctgctaattaccactttcttattcttggggtcatacaacttataagcttttgattcttcactcaaacc 20543671  T
Q  230 aagcagaataca 241  Q
    ||| ||||||||    
T  20543670 aagtagaataca 20543659  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 372 - 532
Target Start/End: Complemental strand, 20541956 - 20541795
Alignment:
Q  372 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 471  Q
    |||||||||||||| |||||||| | ||||||||||||||| | ||||| ||||||||  || |||||||||||| ||||||||||||||||||| ||||    
T  20541956 gaaccttgatactttctacgcatagcatcccaaatatcctttgttgaatctttaaccagaatggtttccatgatttttctatcaatggattgaaaaagat 20541857  T
Q  472 agt-ttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 532  Q
    ||| |||| |||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  20541856 agtttttttacctttagatcaagaagtttactatcctttgcagctttttcttgttctggtgt 20541795  T

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Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 40611432 - 40611644
Alignment:
Q  30 tcaggatcaatttgatttattggctcatcagtt-gtgaattctataacatcatcatcaattagtgttgaacttgattgagtgttttcattatcattccag 128  Q
    ||||| ||| ||||||||| ||||||||||||| ||||||||||| ||||||||||| || |  ||||||||||||||||||||||||||  ||||||||    
T  40611432 tcaggttcactttgatttactggctcatcagtttgtgaattctatcacatcatcatctatcaaggttgaacttgattgagtgttttcattcccattccag 40611531  T
Q  129 ttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgtagcttataagcttttgattcttcactcaaac 228  Q
    ||||||||||||| |||||||||   || ||||||| |||| |||||||||||||| || || ||||  | |||||||||||||||||||||||| ||||    
T  40611532 ttccatccttgtgtttcttcaaaatcaaaatccctgctaattaccactttcttatttttggggtcatacaacttataagcttttgattcttcacttaaac 40611631  T
Q  229 caagcagaataca 241  Q
    |||| ||||||||    
T  40611632 caagtagaataca 40611644  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 372 - 532
Target Start/End: Original strand, 40613366 - 40613526
Alignment:
Q  372 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 471  Q
    |||||||||||||| || ||||| | ||||||||||||||| ||||||| ||||||||  || ||||| |||||| ||||||||||||||||||| ||||    
T  40613366 gaaccttgatactttctgcgcatggcatcccaaatatcctttgctgaatctttaaccataatggtttctatgatttttctatcaatggattgaaaaagat 40613465  T
Q  472 agtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 532  Q
    ||||||| |||||   |||||||||||||||||||||||||   |||||||||||||||||    
T  40613466 agttttttacctttagatcaagaagtttactatcctttgcaaaattttcttgttctggtgt 40613526  T

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Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 98 - 352
Target Start/End: Complemental strand, 3037497 - 3037246
Alignment:
Q  98 acttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgt 197  Q
    ||||| ||| |||||||| | | ||||| |||||||||||||||||||||||||||||||||||||| ||||||  ||||||||  | |||||||||| |    
T  3037497 acttgtttgtgtgttttcgtcagcattcaagttccatccttgtgattcttcaaatataacatccctgctaatcaaaactttcttgctcttaggatcatat 3037398  T
Q  198 agcttataagcttttgattcttcactcaaaccaagcagaatacacctagtactactcttatcatctaacttcttcctctgagagtatgacacatgaacat 297  Q
    ||||| |||||||||||||||||||| ||||| |  | ||||||| |||   ||||||||||||| |||||||  |||||||| | | | |||||   ||    
T  3037397 agcttgtaagcttttgattcttcacttaaacctaaaaaaatacacttag---tactcttatcatccaacttctctctctgagaatctaaaacatgtgaat 3037301  T
Q  298 aagaaatacatcccaaaattctaaaatactttactgaaggttgcacaccactcca 352  Q
    | | ||||||||| || | ||||||||  |  |||||||||| ||||||||||||    
T  3037300 atgcaatacatccaaatactctaaaatgatgcactgaaggtttcacaccactcca 3037246  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 454
Target Start/End: Complemental strand, 3036256 - 3036173
Alignment:
Q  373 aaccttgatacttcctacgcattgtatcccaaatatcct--tagctgaatatttaaccaatatagtttccatgattgttctatc 454  Q
    |||||||||| ||||||| ||||| ||||||||||||||  ||| ||||| ||||||||| |  |||||||||  |||||||||    
T  3036256 aaccttgatatttcctacacattgcatcccaaatatccttatagttgaatctttaaccaagaatgtttccatggctgttctatc 3036173  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 532
Target Start/End: Complemental strand, 3035414 - 3035332
Alignment:
Q  450 ctatcaatggattgaaagagatagtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 532  Q
    |||||||||||||| |||||||| || ||||| |||  ||||   || ||||||||||| ||| |||| ||||||||||||||    
T  3035414 ctatcaatggattggaagagataattcttcactttaagatcacacagcttactatccttcgcaactttctcttgttctggtgt 3035332  T

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Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 372 - 532
Target Start/End: Complemental strand, 17535465 - 17535305
Alignment:
Q  372 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 471  Q
    |||||||||||||| ||||||||||  |||||||||||||||| ||||| |||||| || || |||||||||||||||||||| ||||||||||| ||||    
T  17535465 gaaccttgatactttctacgcattgcctcccaaatatccttagatgaatctttaactaaaatggtttccatgattgttctatcgatggattgaaaaagat 17535366  T
Q  472 agtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 532  Q
    |||| || ||||||  |||||| |||||||| || |||||| | |||||||| ||| ||||    
T  17535365 agttctttaccttaagatcaagtagtttactgtcttttgcaaccttttcttgctctagtgt 17535305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 372 - 529
Target Start/End: Complemental strand, 28106802 - 28106645
Alignment:
Q  372 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 471  Q
    |||||||||| |||||||||||| | ||||| |||||| || ||||||| ||| ||||||||  || ||||||||||||||||||||||||||||||| |    
T  28106802 gaaccttgatgcttcctacgcatagcatcccgaatatcattggctgaatttttgaccaatattattaccatgattgttctatcaatggattgaaagaggt 28106703  T
Q  472 agtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctgg 529  Q
    |||| || || |||  ||||   || |||||||| ||||||||||| |||||||||||    
T  28106702 agttctttactttaagatcacatagcttactatcttttgcagctttctcttgttctgg 28106645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 378 - 529
Target Start/End: Complemental strand, 20528622 - 20528473
Alignment:
Q  378 tgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagatagtttt 477  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||| | |||  |  ||||| ||||||||||||||||||||   ||||||||||| |    
T  20528622 tgatacttcctacgcattgcatcccaaatatccttagctgaatctttgatcaagtttctttccttgattgttctatcaatggat--gaagagatagttct 20528525  T
Q  478 tcaccttataatcaagaagtttactatcctttgcagctttttcttgttctgg 529  Q
    ||||||||  ||||  ||| ||||||||||| ||| |||| |||||||||||    
T  20528524 tcaccttaagatcacaaagcttactatccttcgcaactttctcttgttctgg 20528473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 20530557 - 20530357
Alignment:
Q  23 aggcatctcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgttgaacttgattgagtgttttcattatca 122  Q
    |||||||| |||||| | || ||| | |||| ||||| ||||||| ||||| ||||||||||||| |||| ||  ||||| ||  | ||||     | ||    
T  20530557 aggcatcttaggatctacttcattcactggcacatcatttgtgaactctatcacatcatcatcaactagtattttacttgcttatgagtttgttgcagca 20530458  T
Q  123 ttccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgtagcttataagcttttgattcttcac 222  Q
    ||||||||||| |||||||||||||| ||||| |||||  |  | ||||| | ||||||  | ||||| |||| ||||||||||||||| |||| |||||    
T  20530457 ttccagttccaaccttgtgattcttccaatatgacatctttacttatcacaagtttcttgcttttagggtcatatagcttataagctttagattattcac 20530358  T
Q  223 t 223  Q
    |    
T  20530357 t 20530357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 532
Target Start/End: Original strand, 23940391 - 23940462
Alignment:
Q  461 ttgaaagagatagtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 532  Q
    |||||| |||||||| || |||| |  ||||  ||||||| ||||||||||||||||||||| |||||||||    
T  23940391 ttgaaaaagatagttatttacctaaagatcacaaagtttattatcctttgcagctttttcttattctggtgt 23940462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 481
Target Start/End: Complemental strand, 45341855 - 45341806
Alignment:
Q  432 atagtttccatgattgttctatcaatggattgaaagagatagtttttcac 481  Q
    ||||| ||||||||  |||| |||||||| ||||||||||||||||||||    
T  45341855 atagtctccatgatgtttctttcaatggactgaaagagatagtttttcac 45341806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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