View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13501_low_7 (Length: 486)

Name: NF13501_low_7
Description: NF13501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13501_low_7
NF13501_low_7
[»] chr4 (2 HSPs)
chr4 (9-298)||(16864578-16864864)
chr4 (303-466)||(16862844-16863007)
[»] chr3 (2 HSPs)
chr3 (9-175)||(20543659-20543825)
chr3 (306-466)||(20541795-20541956)
[»] chr8 (2 HSPs)
chr8 (306-466)||(40613366-40613526)
chr8 (9-175)||(40611478-40611644)
[»] chr7 (3 HSPs)
chr7 (32-286)||(3037246-3037497)
chr7 (307-388)||(3036173-3036256)
chr7 (384-466)||(3035332-3035414)
[»] chr6 (2 HSPs)
chr6 (306-466)||(17535305-17535465)
chr6 (306-463)||(28106645-28106802)
[»] chr5 (2 HSPs)
chr5 (312-463)||(20528473-20528622)
chr5 (55-157)||(20530357-20530459)
[»] chr1 (1 HSPs)
chr1 (395-466)||(23940391-23940462)
[»] chr2 (1 HSPs)
chr2 (366-415)||(45341806-45341855)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 16864864 - 16864578
Alignment:
Q  9 acatcatcatcaattagtgttgaacttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcacca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16864864 acatcatcatcaattagtgttgaacttgattgagtgttttcattaccattctagttccatccttgtgattcttcaaatataacatccctggtaatcacca 16864765  T
Q  109 ctttcttattgttaggatcatgtagcttataagcttttgattcttcactcaaaccaagcagaatacacctagtactactcttatcatctaacttcttcct 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  16864764 ctttcttattgttaggatcatgtagcttataagctttttattcttcactcaaaccaagcagaatacacctag---tactcttatcatctaacttcttcct 16864668  T
Q  209 ctgagagtatgacacatgaacataagaaatacatcccaaaattctaaaatactttactgaaggttgcacaccactccacatgaacatatc 298  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16864667 ctgagagtctgacacatgaacataagaaatacatccaaaaattctaaaatactttactgaaggttgcacaccactccacatgaacatatc 16864578  T

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Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 303 - 466
Target Start/End: Complemental strand, 16863007 - 16862844
Alignment:
Q  303 gcggaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaaga 402  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  16863007 gcggaaccttgatacttcctacgcattgcatcccaaatatccttagctgaatctttaaccaatctagtttccatgattgttctatcaatggattgaaaga 16862908  T
Q  403 gatagtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 466  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  16862907 gatagtttttcaccttaagatcaagaagtttactatcctttgcagctttttcttgttctggtgt 16862844  T

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Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 20543825 - 20543659
Alignment:
Q  9 acatcatcatcaattagtgttgaacttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcacca 108  Q
    ||||||||||| || |  ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||    
T  20543825 acatcatcatctatcaaggttgaacttgattgagtgttttcattcccattccagttccatccttgtgtttcttcaaatacaacatccctgctaattacca 20543726  T
Q  109 ctttcttattgttaggatcatgtagcttataagcttttgattcttcactcaaaccaagcagaataca 175  Q
    |||||||||| || || ||||  | ||||||||||||||||||||||||||||||||| ||||||||    
T  20543725 ctttcttattcttggggtcatacaacttataagcttttgattcttcactcaaaccaagtagaataca 20543659  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 306 - 466
Target Start/End: Complemental strand, 20541956 - 20541795
Alignment:
Q  306 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 405  Q
    |||||||||||||| |||||||| | ||||||||||||||| | ||||| ||||||||  || |||||||||||| ||||||||||||||||||| ||||    
T  20541956 gaaccttgatactttctacgcatagcatcccaaatatcctttgttgaatctttaaccagaatggtttccatgatttttctatcaatggattgaaaaagat 20541857  T
Q  406 agt-ttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 466  Q
    ||| |||| |||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  20541856 agtttttttacctttagatcaagaagtttactatcctttgcagctttttcttgttctggtgt 20541795  T

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Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 306 - 466
Target Start/End: Original strand, 40613366 - 40613526
Alignment:
Q  306 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 405  Q
    |||||||||||||| || ||||| | ||||||||||||||| ||||||| ||||||||  || ||||| |||||| ||||||||||||||||||| ||||    
T  40613366 gaaccttgatactttctgcgcatggcatcccaaatatcctttgctgaatctttaaccataatggtttctatgatttttctatcaatggattgaaaaagat 40613465  T
Q  406 agtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 466  Q
    ||||||| |||||   |||||||||||||||||||||||||   |||||||||||||||||    
T  40613466 agttttttacctttagatcaagaagtttactatcctttgcaaaattttcttgttctggtgt 40613526  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 40611478 - 40611644
Alignment:
Q  9 acatcatcatcaattagtgttgaacttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcacca 108  Q
    ||||||||||| || |  ||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||   || ||||||| |||| ||||    
T  40611478 acatcatcatctatcaaggttgaacttgattgagtgttttcattcccattccagttccatccttgtgtttcttcaaaatcaaaatccctgctaattacca 40611577  T
Q  109 ctttcttattgttaggatcatgtagcttataagcttttgattcttcactcaaaccaagcagaataca 175  Q
    |||||||||| || || ||||  | |||||||||||||||||||||||| |||||||| ||||||||    
T  40611578 ctttcttatttttggggtcatacaacttataagcttttgattcttcacttaaaccaagtagaataca 40611644  T

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Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 32 - 286
Target Start/End: Complemental strand, 3037497 - 3037246
Alignment:
Q  32 acttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgt 131  Q
    ||||| ||| |||||||| | | ||||| |||||||||||||||||||||||||||||||||||||| ||||||  ||||||||  | |||||||||| |    
T  3037497 acttgtttgtgtgttttcgtcagcattcaagttccatccttgtgattcttcaaatataacatccctgctaatcaaaactttcttgctcttaggatcatat 3037398  T
Q  132 agcttataagcttttgattcttcactcaaaccaagcagaatacacctagtactactcttatcatctaacttcttcctctgagagtatgacacatgaacat 231  Q
    ||||| |||||||||||||||||||| ||||| |  | ||||||| |||   ||||||||||||| |||||||  |||||||| | | | |||||   ||    
T  3037397 agcttgtaagcttttgattcttcacttaaacctaaaaaaatacacttag---tactcttatcatccaacttctctctctgagaatctaaaacatgtgaat 3037301  T
Q  232 aagaaatacatcccaaaattctaaaatactttactgaaggttgcacaccactcca 286  Q
    | | ||||||||| || | ||||||||  |  |||||||||| ||||||||||||    
T  3037300 atgcaatacatccaaatactctaaaatgatgcactgaaggtttcacaccactcca 3037246  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 388
Target Start/End: Complemental strand, 3036256 - 3036173
Alignment:
Q  307 aaccttgatacttcctacgcattgtatcccaaatatcct--tagctgaatatttaaccaatatagtttccatgattgttctatc 388  Q
    |||||||||| ||||||| ||||| ||||||||||||||  ||| ||||| ||||||||| |  |||||||||  |||||||||    
T  3036256 aaccttgatatttcctacacattgcatcccaaatatccttatagttgaatctttaaccaagaatgtttccatggctgttctatc 3036173  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 466
Target Start/End: Complemental strand, 3035414 - 3035332
Alignment:
Q  384 ctatcaatggattgaaagagatagtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 466  Q
    |||||||||||||| |||||||| || ||||| |||  ||||   || ||||||||||| ||| |||| ||||||||||||||    
T  3035414 ctatcaatggattggaagagataattcttcactttaagatcacacagcttactatccttcgcaactttctcttgttctggtgt 3035332  T

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Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 306 - 466
Target Start/End: Complemental strand, 17535465 - 17535305
Alignment:
Q  306 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 405  Q
    |||||||||||||| ||||||||||  |||||||||||||||| ||||| |||||| || || |||||||||||||||||||| ||||||||||| ||||    
T  17535465 gaaccttgatactttctacgcattgcctcccaaatatccttagatgaatctttaactaaaatggtttccatgattgttctatcgatggattgaaaaagat 17535366  T
Q  406 agtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 466  Q
    |||| || ||||||  |||||| |||||||| || |||||| | |||||||| ||| ||||    
T  17535365 agttctttaccttaagatcaagtagtttactgtcttttgcaaccttttcttgctctagtgt 17535305  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 306 - 463
Target Start/End: Complemental strand, 28106802 - 28106645
Alignment:
Q  306 gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat 405  Q
    |||||||||| |||||||||||| | ||||| |||||| || ||||||| ||| ||||||||  || ||||||||||||||||||||||||||||||| |    
T  28106802 gaaccttgatgcttcctacgcatagcatcccgaatatcattggctgaatttttgaccaatattattaccatgattgttctatcaatggattgaaagaggt 28106703  T
Q  406 agtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctgg 463  Q
    |||| || || |||  ||||   || |||||||| ||||||||||| |||||||||||    
T  28106702 agttctttactttaagatcacatagcttactatcttttgcagctttctcttgttctgg 28106645  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 312 - 463
Target Start/End: Complemental strand, 20528622 - 20528473
Alignment:
Q  312 tgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagatagtttt 411  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||| | |||  |  ||||| ||||||||||||||||||||   ||||||||||| |    
T  20528622 tgatacttcctacgcattgcatcccaaatatccttagctgaatctttgatcaagtttctttccttgattgttctatcaatggat--gaagagatagttct 20528525  T
Q  412 tcaccttataatcaagaagtttactatcctttgcagctttttcttgttctgg 463  Q
    ||||||||  ||||  ||| ||||||||||| ||| |||| |||||||||||    
T  20528524 tcaccttaagatcacaaagcttactatccttcgcaactttctcttgttctgg 20528473  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 20530459 - 20530357
Alignment:
Q  55 cattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgtagcttataagcttttgattcttc 154  Q
    ||||||||||||| |||||||||||||| ||||| |||||  |  | ||||| | ||||||  | ||||| |||| ||||||||||||||| |||| |||    
T  20530459 cattccagttccaaccttgtgattcttccaatatgacatctttacttatcacaagtttcttgcttttagggtcatatagcttataagctttagattattc 20530360  T
Q  155 act 157  Q
    |||    
T  20530359 act 20530357  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 466
Target Start/End: Original strand, 23940391 - 23940462
Alignment:
Q  395 ttgaaagagatagtttttcaccttataatcaagaagtttactatcctttgcagctttttcttgttctggtgt 466  Q
    |||||| |||||||| || |||| |  ||||  ||||||| ||||||||||||||||||||| |||||||||    
T  23940391 ttgaaaaagatagttatttacctaaagatcacaaagtttattatcctttgcagctttttcttattctggtgt 23940462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 45341855 - 45341806
Alignment:
Q  366 atagtttccatgattgttctatcaatggattgaaagagatagtttttcac 415  Q
    ||||| ||||||||  |||| |||||||| ||||||||||||||||||||    
T  45341855 atagtctccatgatgtttctttcaatggactgaaagagatagtttttcac 45341806  T

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