View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13501_low_8 (Length: 484)
Name: NF13501_low_8
Description: NF13501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13501_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 15215187 - 15214722
Alignment:
| Q |
1 |
taaatagaaactaaattgaatttaaagatattaaagctagcatatagaccttatacattattcttataataatatgtggaagcatacacaatgaacaaaa |
100 |
Q |
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| T |
15215187 |
taaatagaaactaaattgaatttaaagatattaaagctagcatatagaccttatacattattcttata-taatatgtggaagcatacacaatgaacaaaa |
15215089 |
T |
|
| Q |
101 |
tataactaagtccacctctattttcatcacataaaagtatcattggagaattcattcacagttaggtcatgcaaaccaaaatcattatccacaaccaatc |
200 |
Q |
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| T |
15215088 |
tataactaagtccacctctattttcatcacataaaagtatcattggagaattcattcacagttagatcatgcaaaccaaaatcattatccacaaccaatc |
15214989 |
T |
|
| Q |
201 |
catcagaaacatccaagttcctaggccttgacaacgagttacccgaattcggaacaaaattgttgttcttgacatattcaaatgagttatagccactctg |
300 |
Q |
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| T |
15214988 |
catcagaaacatccaagttcctaggccttgacaacgagttacccgaattcggaacaaaattgttgttcttgacatattcaaatgagttatagccactctg |
15214889 |
T |
|
| Q |
301 |
ctgttgccgaggcgcttgaatctgttccttgttccatggaaatggcttagtcacttgatgatgaacttgattataacttgtgctactaagttgtgacatt |
400 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15214888 |
ctgttgccgaggcgcttgaatttgctccttgttccatggaaatggcttagtcacttgatgatgaacttgattataacttgtgctactaagttgtgacatt |
15214789 |
T |
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| Q |
401 |
aacctagctgttgtgtcatgttgaacattctgtttgctactaccttgttgaaagtttaaggtaatag |
467 |
Q |
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| T |
15214788 |
aacctagctgttgtgtcatgttgaacattctgtttgctactaccttgttgaaagtttaaggtaatag |
15214722 |
T |
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