View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13502_high_1 (Length: 445)
Name: NF13502_high_1
Description: NF13502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13502_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 30128368 - 30127986
Alignment:
| Q |
8 |
agaaggagcacagacatttgagggataatggggcacacactacctcaagagacaatattcgggatcccagcacaaaattttcatcactatatactttatt |
107 |
Q |
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| T |
30128368 |
agaagaagcgcagacatttgagggataatggggcacacactacctcaagagacaatattcgggatcccagcacaaaattttcatcactatatactttatt |
30128269 |
T |
|
| Q |
108 |
ttgtgttcttttcactcaaaaaatctaactttccttcacccctgttctctattttttgcaatattgataatttgaaacaaggtatcctctaaagtatgga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30128268 |
ttgtgttcttttcactcaaaaaatctaactttccttcacccatgttctctattttttgcaatattgataatttgaaacaaggtatcctctctagtatgga |
30128169 |
T |
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| Q |
208 |
tacgcaacctcccttgccaaatggccccagcattccattaaacatgtatccttaaagtcggagtggccactcagcatatggtgttacagaaacgtggttg |
307 |
Q |
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| T |
30128168 |
tacgcaacctcccttgccaaatggccccatcattccattaaacatgtatccttaaagtcggagtggccactcagcttatggtgttacagaaacgtggttg |
30128069 |
T |
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| Q |
308 |
agagatatttttattaagggtagcatttaggttgagcatcgaatgcaccttatgtaaggaaagttcggaaatccaaggcctta |
390 |
Q |
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| T |
30128068 |
agagatatttttattaagggtagcatttaggttgagcatcgaatgcaccttatgtaaggaaagttcggatatccaaggcctta |
30127986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 36288659 - 36288612
Alignment:
| Q |
115 |
cttttcactcaaaaaatctaactttccttcacccctgttctctatttt |
162 |
Q |
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|||||||||| |||| || ||||||||||||||||| ||||||||||| |
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| T |
36288659 |
cttttcactctaaaattcaaactttccttcaccccttttctctatttt |
36288612 |
T |
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