View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13502_high_2 (Length: 397)

Name: NF13502_high_2
Description: NF13502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13502_high_2
NF13502_high_2
[»] chr2 (13 HSPs)
chr2 (14-331)||(15215340-15215655)
chr2 (158-276)||(929005-929122)
chr2 (161-276)||(34504159-34504275)
chr2 (156-276)||(3903676-3903794)
chr2 (156-276)||(2788399-2788521)
chr2 (189-282)||(30713473-30713565)
chr2 (158-273)||(17250137-17250251)
chr2 (198-276)||(12776228-12776306)
chr2 (163-276)||(2080574-2080686)
chr2 (189-269)||(16400613-16400694)
chr2 (211-276)||(41464129-41464194)
chr2 (162-276)||(37624269-37624380)
chr2 (157-205)||(44966139-44966187)
[»] chr3 (14 HSPs)
chr3 (158-276)||(54362010-54362127)
chr3 (190-276)||(20354700-20354786)
chr3 (160-275)||(9762719-9762837)
chr3 (160-275)||(9775932-9776048)
chr3 (156-276)||(37311621-37311741)
chr3 (163-276)||(53683922-53684036)
chr3 (180-276)||(3455843-3455939)
chr3 (161-276)||(23071939-23072055)
chr3 (189-273)||(23658480-23658564)
chr3 (160-276)||(45054621-45054737)
chr3 (161-276)||(48855535-48855650)
chr3 (189-270)||(41666925-41667005)
chr3 (189-276)||(43271655-43271742)
chr3 (159-196)||(44243527-44243564)
[»] chr4 (14 HSPs)
chr4 (150-277)||(2554131-2554257)
chr4 (163-276)||(23240996-23241109)
chr4 (162-276)||(3527863-3527978)
chr4 (191-276)||(13529361-13529446)
chr4 (163-276)||(14134832-14134945)
chr4 (163-276)||(2548976-2549085)
chr4 (189-276)||(50685603-50685690)
chr4 (198-276)||(19904510-19904588)
chr4 (174-276)||(39890830-39890931)
chr4 (161-276)||(33111936-33112051)
chr4 (225-276)||(8488676-8488727)
chr4 (225-276)||(32104585-32104636)
chr4 (157-249)||(13901993-13902084)
chr4 (189-272)||(48809867-48809950)
[»] chr7 (13 HSPs)
chr7 (190-276)||(18026010-18026096)
chr7 (158-276)||(37708508-37708626)
chr7 (191-276)||(9658337-9658422)
chr7 (159-276)||(42121302-42121417)
chr7 (163-276)||(17503582-17503694)
chr7 (163-276)||(17549520-17549632)
chr7 (203-276)||(36034718-36034791)
chr7 (158-276)||(25781031-25781149)
chr7 (179-276)||(37006633-37006730)
chr7 (225-276)||(26715112-26715162)
chr7 (162-265)||(32854238-32854341)
chr7 (229-276)||(33645232-33645279)
chr7 (189-249)||(29724364-29724424)
[»] chr6 (5 HSPs)
chr6 (158-276)||(7509702-7509820)
chr6 (189-276)||(28578151-28578241)
chr6 (168-276)||(5456600-5456709)
chr6 (194-272)||(12217127-12217204)
chr6 (231-276)||(5051588-5051633)
[»] chr1 (11 HSPs)
chr1 (162-269)||(47206716-47206822)
chr1 (158-276)||(3150631-3150749)
chr1 (189-276)||(32543937-32544024)
chr1 (164-249)||(42728502-42728587)
chr1 (159-276)||(10783569-10783690)
chr1 (190-242)||(49044706-49044758)
chr1 (190-276)||(29866999-29867085)
chr1 (155-276)||(9166160-9166280)
chr1 (229-270)||(29730960-29731001)
chr1 (192-273)||(37316136-37316217)
chr1 (232-276)||(16304110-16304154)
[»] chr5 (13 HSPs)
chr5 (162-271)||(29855426-29855533)
chr5 (163-267)||(36187500-36187604)
chr5 (179-273)||(30784284-30784379)
chr5 (159-273)||(30873010-30873124)
chr5 (189-276)||(141321-141408)
chr5 (225-276)||(9780768-9780819)
chr5 (189-276)||(29429620-29429707)
chr5 (168-276)||(36187646-36187756)
chr5 (190-276)||(12289015-12289101)
chr5 (163-256)||(6809628-6809720)
chr5 (163-270)||(6818560-6818665)
chr5 (157-215)||(19961517-19961575)
chr5 (216-276)||(17025773-17025833)
[»] scaffold0121 (1 HSPs)
scaffold0121 (160-272)||(33984-34097)
[»] chr8 (6 HSPs)
chr8 (173-276)||(42486524-42486626)
chr8 (158-270)||(25186135-25186247)
chr8 (190-276)||(1914578-1914664)
chr8 (193-276)||(14441463-14441541)
chr8 (158-215)||(38666343-38666400)
chr8 (162-276)||(17958665-17958774)
[»] scaffold0047 (1 HSPs)
scaffold0047 (161-276)||(66115-66229)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 15215340 - 15215655
Alignment:
Q  14 atcctttttgttcccggtgaattcctttgattaaatggtgatttttcttcttgttcttaaattcttcgagggtagttcagcttatggggttgtttaagat 113  Q
    |||| |||||||||||||||||||| |||||||||| ||  ||||||||| |||||||||||||||| || |||||||| |||||| | |||| || ||     
T  15215340 atcccttttgttcccggtgaattcccttgattaaattgttctttttcttcatgttcttaaattcttcaagtgtagttcaacttatgtgattgtatacgaa 15215439  T
Q  114 aagaggtaacactatattttcattattcattctcttattaataaaagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaa 213  Q
    ||| ||||||| ||| |||  ||||||||||||||||||||||||||| |||||||||||| ||  ||||||||  |||||||||||||||||||| |||    
T  15215440 aagtggtaacattattttt--attattcattctcttattaataaaaggaaaatgttaacttatgctcttaaaacataagttaatgagtcaaaagtagaaa 15215537  T
Q  214 tatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaacttaacattaccctaaataaaatcaaggtaggtacaa 313  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15215538 tatattgttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaacttaacattaccctaaataaaatcaaggcaggtacaa 15215637  T
Q  314 ttactttatgtgggaatg 331  Q
    ||||||||||||||||||    
T  15215638 ttactttatgtgggaatg 15215655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 929005 - 929122
Alignment:
Q  158 aagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttt 257  Q
    ||||||||||||||||||||||||||| || |||||||| |||||||||||| |||||| || ||| ||| ||||||||||||||||||||| |||||||    
T  929005 aagggaaatgttaacttgtgtccttaagacacaagttaaagagtcaaaagtagaaatattttgttgtaatcaatgcatttgaatttaatttt-ttacttt 929103  T
Q  258 ttattaattgaatgcacaa 276  Q
    | |  ||||||||||||||    
T  929104 tgaagaattgaatgcacaa 929122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 34504159 - 34504275
Alignment:
Q  161 ggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaattta-attttattacttttt 259  Q
    ||||||||||||||||| |||||| || ||||||||||| ||||||||| |||||  || ||| ||| ||||||||||||||||  |||| ||||||||     
T  34504159 ggaaatgttaacttgtgcccttaagacacaagttaatgaatcaaaagtagaaataagttgttgcaatcaatgcatttgaatttagttttttttactttta 34504258  T
Q  260 attaattgaatgcacaa 276  Q
    |||||||||||||||||    
T  34504259 attaattgaatgcacaa 34504275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 3903676 - 3903794
Alignment:
Q  156 aaaagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattact 255  Q
    |||| ||||||| |||||||||  |||||| | ||||||||||||||| ||||| ||||||  | ||| ||||||||||||||||||||||||| |||||    
T  3903676 aaaaaggaaatgctaacttgtgctcttaaaccacaagttaatgagtcagaagtagaaatat--tgttgtaattaatgcatttgaatttaatttttttact 3903773  T
Q  256 ttttattaattgaatgcacaa 276  Q
    ||| ||||| | |||||||||    
T  3903774 tttaattaactaaatgcacaa 3903794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 2788399 - 2788521
Alignment:
Q  156 aaaagggaaatgttaacttgtgtccttaaaacccaagttaatg--agtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttatta 253  Q
    |||||| | ||| |||| |||||| |||| || ||||||||||  |||||||||| ||||||| || ||| || |||||||||| |||||||| || |||    
T  2788399 aaaaggaagatgctaacatgtgtctttaagacacaagttaatgtgagtcaaaagtgaaaatattttattgtaactaatgcatttaaatttaatattttta 2788498  T
Q  254 ctttttattaattgaatgcacaa 276  Q
     |||| |||||||||||||||||    
T  2788499 tttttaattaattgaatgcacaa 2788521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 30713565 - 30713473
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaacttaac 282  Q
    ||||||||||| | |||||||||||||| || ||| |||||||  |||| | ||||||||| |||||||| ||||||||||||||||| |||||    
T  30713565 caagttaatgaattaaaagtaaaaatat-ttgttgtaattaatatatttaattttaatttttttacttttaattaattgaatgcacaagttaac 30713473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 17250137 - 17250251
Alignment:
Q  158 aagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttt 257  Q
    |||||||||| ||||||||| |||| | |  |||||||||||| |||||||||||| | ||| ||| ||||| ||||||||  ||||||||| ||| |||    
T  17250137 aagggaaatgctaacttgtgccctttagagacaagttaatgagccaaaagtaaaaaaaaattgttgtaattattgcatttgtttttaatttt-ttaattt 17250235  T
Q  258 ttattaattgaatgca 273  Q
    | ||||||| ||||||    
T  17250236 taattaattaaatgca 17250251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 12776306 - 12776228
Alignment:
Q  198 gagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||||||||||| ||||||  | ||| ||| |||||||||||||||| |||| |||| ||||||||||| |||||||||    
T  12776306 gagtcaaaagtagaaatattgtattgtaatcaatgcatttgaatttattttttttacattttattaattaaatgcacaa 12776228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 2080686 - 2080574
Alignment:
Q  163 aaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttatt 262  Q
    ||||| |||||||||  ||||| |  |||||||  |||||||||||| ||||||  | ||| ||| |||||||||||||||||| || ||||||||  ||    
T  2080686 aaatgctaacttgtgctcttaagatacaagttagcgagtcaaaagtataaatattgttttgtaatcaatgcatttgaatttaatatt-ttacttttgttt 2080588  T
Q  263 aattgaatgcacaa 276  Q
    ||||||||||||||    
T  2080587 aattgaatgcacaa 2080574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 16400613 - 16400694
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaatatattcttgaaatt-aatgcatttgaatttaattttattactttttattaattgaa 269  Q
    ||||||||||||||||||||| |||||| || |  | | | ||||||||||||||||||||| |||||| | ||||||||||    
T  16400613 caagttaatgagtcaaaagtataaatattttgtgtatagtcaatgcatttgaatttaatttttttacttatgattaattgaa 16400694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 41464194 - 41464129
Alignment:
Q  211 aaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||| ||| ||| ||||||||||||| ||||||||| | | |||||| |||||||||||||||||    
T  41464194 aaataaattgttgtaattaatgcatttcaatttaattctttaacttttgattaattgaatgcacaa 41464129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 276
Target Start/End: Original strand, 37624269 - 37624380
Alignment:
Q  162 gaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttat 261  Q
    |||||||||| ||||||||||||| | ||  |||||  || ||||||| |||||| || ||  ||| |||| |||||||||||||||| ||| |||| ||    
T  37624269 gaaatgttaatttgtgtccttaaagcacacattaat--gttaaaagtataaatattttattataatcaatgtatttgaatttaatttt-ttatttttgat 37624365  T
Q  262 taattgaatgcacaa 276  Q
    ||||||||| |||||    
T  37624366 taattgaatacacaa 37624380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 44966187 - 44966139
Alignment:
Q  157 aaagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaa 205  Q
    ||||||||||||||||||||| ||||||  | ||||||||||| |||||    
T  44966187 aaagggaaatgttaacttgtgcccttaaggcacaagttaatgattcaaa 44966139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 54362010 - 54362127
Alignment:
Q  158 aagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttt 257  Q
    |||||||||||||||||||| ||||||  | ||||||||||||||||||||| |||||| |  ||| ||| ||||||||||||||||||||| ||| |||    
T  54362010 aagggaaatgttaacttgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatttaattttttta-ttt 54362108  T
Q  258 ttattaattgaatgcacaa 276  Q
    | |||||||||||||||||    
T  54362109 taattaattgaatgcacaa 54362127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 20354700 - 20354786
Alignment:
Q  190 aagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||||||| ||||||||||| |||||| || ||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  20354700 aagttaatcagtcaaaagtagaaatattttattgtaattaatgcatttgaatttaattttgttacttttaattaattgaatacacaa 20354786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 9762837 - 9762719
Alignment:
Q  160 gggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaa---ttttattactt 256  Q
    |||||||| |||||||||||  |||  | ||| ||||||||||||||||| |||||| || ||| |||||||||||||||||||||   |||| ||||||    
T  9762837 gggaaatgctaacttgtgtcgataaggcacaaattaatgagtcaaaagtagaaatattttattgtaattaatgcatttgaatttaattttttttttactt 9762738  T
Q  257 tttattaattgaatgcaca 275  Q
    || ||||||||||||||||    
T  9762737 ttgattaattgaatgcaca 9762719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 9776048 - 9775932
Alignment:
Q  160 gggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaa-ttttattactttt 258  Q
    |||||||| |||||||||||  |||  | |||||||||| ||||||| ||||||||| || ||| | ||||||||||||||||||| |||| ||||||||    
T  9776048 gggaaatgctaacttgtgtcgataaggcacaagttaatgtgtcaaaaataaaaatattttattgtagttaatgcatttgaatttaattttttttactttt 9775949  T
Q  259 tattaattgaatgcaca 275  Q
     ||||||||||||||||    
T  9775948 gattaattgaatgcaca 9775932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 37311621 - 37311741
Alignment:
Q  156 aaaagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattact 255  Q
    |||| |||||| |||| ||||| || |||  | |||||||||||| |||||||| |||||  || ||| ||||||||||||||||||||||||| | |||    
T  37311621 aaaatggaaatattaatttgtgcccgtaaggcacaagttaatgagacaaaagtataaataatttgttgtaattaatgcatttgaatttaattttttgact 37311720  T
Q  256 ttttattaattgaatgcacaa 276  Q
    ||| |||||||||||||||||    
T  37311721 tttgattaattgaatgcacaa 37311741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 53683922 - 53684036
Alignment:
Q  163 aaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttttt-at 261  Q
    ||||||||||||||| ||||||  | |||||||||||| ||||||| ||||||  || ||  |||||||| |||||||||||||||| | ||||||| ||    
T  53683922 aaatgttaacttgtgcccttaaggcacaagttaatgagccaaaagtgaaaataatttgttttaattaatgtatttgaatttaattttttgactttttgat 53684021  T
Q  262 taattgaatgcacaa 276  Q
    ||||||||| |||||    
T  53684022 taattgaatacacaa 53684036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 3455939 - 3455843
Alignment:
Q  180 cttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||| || ||||||||||||||||| ||| |||||| |||||| |||||||||| ||| |||||||||| ||| |||| ||||  |||||||||||    
T  3455939 cttaagacacaagttaatgagtcaaatgtagaaatattttcttgtaattaatgcacttgcatttaatttttttaattttaattagctgaatgcacaa 3455843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 23072055 - 23071939
Alignment:
Q  161 ggaaatgttaacttgtgtccttaaaaccc-aagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttttt 259  Q
    ||||||||||||||||  |||||||  |  ||||||||||| ||||||| ||||||| || ||| ||||||||||||||||||||||| | | ||||||     
T  23072055 ggaaatgttaacttgtacccttaaaggcataagttaatgagccaaaagtgaaaatattttattgtaattaatgcatttgaatttaattgtttgacttttg 23071956  T
Q  260 attaattgaatgcacaa 276  Q
    ||||||| |||| ||||    
T  23071955 attaattaaatgtacaa 23071939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 23658564 - 23658480
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgca 273  Q
    ||||||||||||| |||| | |||||| | | ||| ||||||||||||||||||||||| | | |||||| ||||||||||||||    
T  23658564 caagttaatgagttaaaaatgaaaataaactattgtaattaatgcatttgaatttaattctttaacttttgattaattgaatgca 23658480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 45054621 - 45054737
Alignment:
Q  160 gggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttttt 259  Q
    ||||||||||||||||||  | ||| || || |||||||||| ||||||  |||||  |  |||  || |||| |||||||||||||||| ||||||||     
T  45054621 gggaaatgttaacttgtgcacgtaagacacacgttaatgagttaaaagttgaaataattggttgtgataaatgtatttgaatttaatttttttacttttg 45054720  T
Q  260 attaattgaatgcacaa 276  Q
    |||||||||||| ||||    
T  45054721 attaattgaatgtacaa 45054737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 48855650 - 48855535
Alignment:
Q  161 ggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttttta 260  Q
    |||||| ||| |||||||||||||  | ||||||||||||  ||||||  ||||| ||| ||| ||||||| ||||||||||||||| | | | |||  |    
T  48855650 ggaaatattatcttgtgtccttaaggcacaagttaatgagctaaaagtggaaataaattgttgtaattaattcatttgaatttaattctttaattttaga 48855551  T
Q  261 ttaattgaatgcacaa 276  Q
    |||||||||| |||||    
T  48855550 ttaattgaatacacaa 48855535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 41666925 - 41667005
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaat 270  Q
    |||||||||||||||||||||||||||| || ||| ||| |||||| |||  |||  |||| |||||||| |||||||||||    
T  41666925 caagttaatgagtcaaaagtaaaaatattttattgtaatcaatgcacttg-tttttttttttttacttttaattaattgaat 41667005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 43271655 - 43271742
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||||||| ||||||||  ||||||  | ||| ||| ||||||||||||||||||||  | | |||| |||||||||||| ||||    
T  43271655 caagttaatgaatcaaaagtggaaatattctgttgtaataaatgcatttgaatttaatttattcatttttgattaattgaatgtacaa 43271742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 44243527 - 44243564
Alignment:
Q  159 agggaaatgttaacttgtgtccttaaaacccaagttaa 196  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  44243527 agggaaatgttaacttgtgtcctaaaaacacaagttaa 44243564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 150 - 277
Target Start/End: Complemental strand, 2554257 - 2554131
Alignment:
Q  150 attaataaaagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaatttt 249  Q
    ||||||| | |||||||| ||||||||| ||||||  | ||||||||||| |||||| || |||||| |  ||| ||||||||||||||||||||| |||    
T  2554257 attaatatatgggaaatgctaacttgtgcccttaaggcacaagttaatgaatcaaaaatagaaatatttaattgtaattaatgcatttgaatttaaattt 2554158  T
Q  250 attactttttattaattgaatgcacaac 277  Q
     |||||||| ||||||||||||||||||    
T  2554157 -ttacttttaattaattgaatgcacaac 2554131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 23240996 - 23241109
Alignment:
Q  163 aaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttatt 262  Q
    ||||||||| ||||||| || || |  |||||||||||| |||||||||||||| || ||  |||||||||||||||||||||||||  ||||||| |||    
T  23240996 aaatgttaatttgtgtcttttaagcataagttaatgagttaaaagtaaaaatattttgttacaattaatgcatttgaatttaatttttatacttttaatt 23241095  T
Q  263 aattgaatgcacaa 276  Q
    ||||||| ||||||    
T  23241096 aattgaaggcacaa 23241109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 276
Target Start/End: Original strand, 3527863 - 3527978
Alignment:
Q  162 gaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattt-tattacttttta 260  Q
    ||||||||||| ||||||||||| || ||||| ||| |||| |||||| |||||| || ||| ||| |||||||||||||||||||| | ||| |||| |    
T  3527863 gaaatgttaacatgtgtccttaagacacaagtcaataagtccaaagtagaaatattttgttgtaatcaatgcatttgaatttaatttattttatttttga 3527962  T
Q  261 ttaattgaatgcacaa 276  Q
    ||||||||||||||||    
T  3527963 ttaattgaatgcacaa 3527978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 13529361 - 13529446
Alignment:
Q  191 agttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||||||||||||||| |||| | || ||| ||||||||||||||||||||||||| |||||||| ||||||| |||| ||||    
T  13529361 agttaatgagtcaaaagtataaattttttgttgtaattaatgcatttgaatttaatttttttacttttgattaattaaatgaacaa 13529446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 14134945 - 14134832
Alignment:
Q  163 aaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttatt 262  Q
    |||| |||||||||||||||||     |||||||||||||||||||| | |||| |  ||| |||||||||||||||| |||||||| || ||||| |||    
T  14134945 aaatattaacttgtgtccttaaggtataagttaatgagtcaaaagtatacatatttctttgtaattaatgcatttgaacttaatttttttccttttaatt 14134846  T
Q  263 aattgaatgcacaa 276  Q
    ||||||||||||||    
T  14134845 aattgaatgcacaa 14134832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 2548976 - 2549085
Alignment:
Q  163 aaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaa-ttttattactttttat 261  Q
    ||||||||||||||||||||||    ||||||||||| ||||||||||||| ||     || ||||||||||||||||||||| |||| |||||||| ||    
T  2548976 aaatgttaacttgtgtccttaaggaacaagttaatgaatcaaaagtaaaaacat-----tgcaattaatgcatttgaatttaacttttcttacttttaat 2549070  T
Q  262 taattgaatgcacaa 276  Q
    ||||| |||||||||    
T  2549071 taattaaatgcacaa 2549085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 50685603 - 50685690
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||||||||||| |||||||  |||||  || ||| ||| |||| |||||||||||||||| |||||||| |||||||||||||||||    
T  50685603 caagttaatgagccaaaagtggaaataatttgttgtaataaatgtatttgaatttaatttttttacttttaattaattgaatgcacaa 50685690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 19904588 - 19904510
Alignment:
Q  198 gagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||||||| |||||||||| || ||  ||||||| ||||||||||||| ||| |||||||| |||||||||||||||||    
T  19904588 gagtcaaacgtaaaaatattttgttttaattaattcatttgaatttaaattttttacttttaattaattgaatgcacaa 19904510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 39890830 - 39890931
Alignment:
Q  174 tgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgca 273  Q
    ||||||||||| || |||||||||||||||||| || |||||   | ||  ||| ||||||| ||||||||||||| ||||||||||||||||||||| |    
T  39890830 tgtgtccttaagacacaagttaatgagtcaaaaatagaaatactgtgttataatcaatgcatatgaatttaatttt-ttactttttattaattgaatgta 39890928  T
Q  274 caa 276  Q
    |||    
T  39890929 caa 39890931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 33112051 - 33111936
Alignment:
Q  161 ggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttttta 260  Q
    ||||||||||  ||||| ||||||  | |||||||| || |||||||| ||||||  || ||| |||||||  |||||||||||||||| | |||||| |    
T  33112051 ggaaatgttattttgtgcccttaacgcacaagttaacgaatcaaaagtgaaaataatttattgtaattaatctatttgaatttaattttttcacttttca 33111952  T
Q  261 ttaattgaatgcacaa 276  Q
    |||||| |||||||||    
T  33111951 ttaattaaatgcacaa 33111936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 8488727 - 8488676
Alignment:
Q  225 aattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||| |||||    
T  8488727 aattaatgcatttgaatttaattttttgacttttgattaattgaatacacaa 8488676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 32104636 - 32104585
Alignment:
Q  225 aattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||||||||| ||||||||||| |||||||| |||| ||||||||||||    
T  32104636 aattaatgcatttaaatttaatttttttacttttaattatttgaatgcacaa 32104585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 13901993 - 13902084
Alignment:
Q  157 aaagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaatttt 249  Q
    ||||| ||||||||||||||  |||| ||  | ||| |||||||||||||||| |||||| |  ||| ||| |||||||||||||||||||||    
T  13901993 aaaggaaaatgttaacttgta-cctttaaggcaaaggtaatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatttaatttt 13902084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 48809867 - 48809950
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgc 272  Q
    |||||||||||||| ||||| ||||||| || ||  ||| |||| |||| ||||||||||| | | |||| |||||||||||||    
T  48809867 caagttaatgagtctaaagtgaaaatattttgttataataaatgtatttaaatttaattttttcatttttaattaattgaatgc 48809950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 18026010 - 18026096
Alignment:
Q  190 aagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||| ||||||||||| |||| | ||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  18026010 aagttaacgagtcaaaagttaaaaaaaattgttgtaattaatgcatttgaatttaatttttttacttttaattaattgaatgcacaa 18026096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 276
Target Start/End: Complemental strand, 37708626 - 37708508
Alignment:
Q  158 aagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttt 257  Q
    ||||||||||| |||||||  ||||||| |  ||||||||||| ||||||| |||||   || ||| ||| ||||||||||||||||||||| |||||||    
T  37708626 aagggaaatgtcaacttgtacccttaaagcataagttaatgagccaaaagtgaaaatgatttgttgtaataaatgcatttgaatttaatttttttacttt 37708527  T
Q  258 ttattaattgaatgcacaa 276  Q
    | |||||||||||||||||    
T  37708526 tgattaattgaatgcacaa 37708508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 9658337 - 9658422
Alignment:
Q  191 agttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||||||||||||||| |||| | || ||| ||||||||||||||||||||||||| |||||||| ||||||| |||| ||||    
T  9658337 agttaatgagtcaaaagtataaattttttgttgtaattaatgcatttgaatttaatttttttacttttgattaattaaatgaacaa 9658422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 42121302 - 42121417
Alignment:
Q  159 agggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttt 258  Q
    ||||||||| ||||||||| |||||  ||  |||||||||||| |||| || |||||  || ||| ||||||||||||||||||||||||| | ||||||    
T  42121302 agggaaatgctaacttgtgcccttagtac--aagttaatgagttaaaaatataaataatttgttgtaattaatgcatttgaatttaattttttcactttt 42121399  T
Q  259 tattaattgaatgcacaa 276  Q
     |||||||||||| ||||    
T  42121400 cattaattgaatgtacaa 42121417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 17503694 - 17503582
Alignment:
Q  163 aaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttatt 262  Q
    ||||| ||| ||||| ||| || || ||||||||||| |||||| || |||||| || ||  |||||||||||||||||| |||||| |||||||| |||    
T  17503694 aaatgctaatttgtgccctcaagacacaagttaatgaatcaaaa-tagaaatattttgttataattaatgcatttgaattcaatttttttacttttcatt 17503596  T
Q  263 aattgaatgcacaa 276  Q
    ||||||||||||||    
T  17503595 aattgaatgcacaa 17503582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 17549520 - 17549632
Alignment:
Q  163 aaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttatt 262  Q
    ||||| ||| ||||| ||| || || ||||||||||| |||||| || |||||| || ||  |||||||||||||||||| |||||| |||||||| |||    
T  17549520 aaatgctaatttgtgccctcaagacacaagttaatgaatcaaaa-tagaaatattttgttataattaatgcatttgaattcaatttttttacttttcatt 17549618  T
Q  263 aattgaatgcacaa 276  Q
    ||||||||||||||    
T  17549619 aattgaatgcacaa 17549632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 36034718 - 36034791
Alignment:
Q  203 aaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||||||||||||| || ||| ||||||| |||||||||||||||||  ||||||| ||||| |||||||||||    
T  36034718 aaaagtaaaaatattttattgtaattaattcatttgaatttaatttttctacttttgattaactgaatgcacaa 36034791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 25781031 - 25781149
Alignment:
Q  158 aagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagt-aaaaatatattcttgaaattaatgcatttgaatttaattttattactt 256  Q
    |||| |||| |||||||||| ||||||  | |||||||||||  ||||||| |||||||| || ||| |||||||| |||||||||||||||| | | ||    
T  25781031 aaggaaaatattaacttgtgcccttaaggcacaagttaatgaaccaaaagtgaaaaatat-ttattgtaattaatgtatttgaatttaattttttcattt 25781129  T
Q  257 tttattaattgaatgcacaa 276  Q
    || ||||||||||| |||||    
T  25781130 ttaattaattgaatacacaa 25781149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 37006633 - 37006730
Alignment:
Q  179 ccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcattt-gaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||||| ||||| ||||||| ||| ||| |||||| || ||  ||||||||||||| |||||||||||| |||||||| ||||||| |||||||||    
T  37006633 ccttaaaacacaagtaaatgagttaaa-gtagaaatattttgttataattaatgcattttgaatttaattttgttacttttgattaatttaatgcacaa 37006730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 26715112 - 26715162
Alignment:
Q  225 aattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||||||||||||||||||||| | |||||| |||||||||||||||||    
T  26715112 aattaatgcatttgaatttaatttt-tcacttttgattaattgaatgcacaa 26715162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 265
Target Start/End: Original strand, 32854238 - 32854341
Alignment:
Q  162 gaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttat 261  Q
    |||||| |||| |||| ||||||||| ||||||||||||| ||||||  |||||  || ||  ||| |||||||||||| |||||| | |||||||| ||    
T  32854238 gaaatgctaacctgtgcccttaaaacacaagttaatgagttaaaagtggaaataatttgttctaatcaatgcatttgaaattaattattttacttttaat 32854337  T
Q  262 taat 265  Q
    ||||    
T  32854338 taat 32854341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 33645279 - 33645232
Alignment:
Q  229 aatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||||||||||||||||||||||||||||| ||||||| | |||||||    
T  33645279 aatgcatttgaatttaattttattacttttaattaattaagtgcacaa 33645232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 29724424 - 29724364
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaatttt 249  Q
    ||||| ||| ||||||||||| |||||  || ||| ||| |||||||||||||||||||||    
T  29724424 caagtaaataagtcaaaagtagaaataatttgttgtaataaatgcatttgaatttaatttt 29724364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 276
Target Start/End: Complemental strand, 7509820 - 7509702
Alignment:
Q  158 aagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttt 257  Q
    |||||||||| |||||| || ||||||  | ||||||||||||||||||||| ||||||  | ||| ||| |||||||||||||||| |||| ||| |||    
T  7509820 aagggaaatgctaacttttgcccttaaggcacaagttaatgagtcaaaagtagaaatattgtgttgtaatcaatgcatttgaatttactttttttatttt 7509721  T
Q  258 ttattaattgaatgcacaa 276  Q
    | |||||||||||||||||    
T  7509720 tgattaattgaatgcacaa 7509702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 28578151 - 28578241
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaata---tattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||||||||||||||||| ||||||||   | || | | ||||||||||||||||||||| ||| |||||||| | |||||||||||||||    
T  28578151 caagttaatgagtcaaaaataaaaataatattttgtagtaattaatgcatttgaatttaacttttttacttttaaataattgaatgcacaa 28578241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 5456709 - 5456600
Alignment:
Q  168 ttaacttgtgtccttaaaacccaagttaatgagtcaaaagta-aaaatatattcttgaaattaatgcatttgaatttaattttatt-actttttattaat 265  Q
    ||||| |||| |||||| || |||||||||||  |||||||  ||||||| || ||| | ||||| ||||||||||||||||| || |||||| ||||||    
T  5456709 ttaacgtgtgcccttaagacacaagttaatgaaccaaaagtggaaaatat-ttattgtagttaatacatttgaatttaattttttttacttttgattaat 5456611  T
Q  266 tgaatgcacaa 276  Q
    ||||| |||||    
T  5456610 tgaatacacaa 5456600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 12217204 - 12217127
Alignment:
Q  194 taatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgc 272  Q
    ||||||||||||||||||||||| || ||| |||||||  |||| ||||| || || ||||||||| |||||| |||||    
T  12217204 taatgagtcaaaagtaaaaatattttgttg-aattaatatatttaaattttatctttttactttttgttaattaaatgc 12217127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 5051633 - 5051588
Alignment:
Q  231 tgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||||||||||||||| |||||||| ||||||| | |||||||    
T  5051633 tgcatttgaatttaatttttttacttttaattaattaagtgcacaa 5051588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 47206716 - 47206822
Alignment:
Q  162 gaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttat 261  Q
    |||||||||||||||||| |||| || |||||||||||||||||| ||||||||  || ||| |||||||| |||| |||||||||||  ||||||| ||    
T  47206716 gaaatgttaacttgtgtc-ttaagacacaagttaatgagtcaaaaataaaaatactttgttgtaattaatgtatttcaatttaatttttctacttttaat 47206814  T
Q  262 taattgaa 269  Q
    ||||||||    
T  47206815 taattgaa 47206822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 3150631 - 3150749
Alignment:
Q  158 aagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttt 257  Q
    |||| |||||||||| ||||  ||||| || ||||||||  ||||||||||  |||||  || ||| ||||||| |||||||||||||||||  ||||||    
T  3150631 aaggaaaatgttaacctgtgctcttaagacacaagttaacaagtcaaaagtggaaataatttgttgtaattaatacatttgaatttaatttttatacttt 3150730  T
Q  258 ttattaattgaatgcacaa 276  Q
    |||||||||||||||||||    
T  3150731 ttattaattgaatgcacaa 3150749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 276
Target Start/End: Complemental strand, 32544024 - 32543937
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||||||||| |||||||||| |||||| || ||  |||||||||| || ||||||||||| |||||||| |||||||||||||||||    
T  32544024 caagttaatgtgtcaaaagtataaatattttgttataattaatgcaatttaatttaatttttttacttttaattaattgaatgcacaa 32543937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 42728587 - 42728502
Alignment:
Q  164 aatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaatttt 249  Q
    |||| ||||||||| |||| |||| ||| |||||||||||||| | ||||||| || ||||| |||||||||||||||||| ||||    
T  42728587 aatgctaacttgtgcccttcaaacacaaattaatgagtcaaaaatgaaaatattttattgaatttaatgcatttgaatttactttt 42728502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 10783569 - 10783690
Alignment:
Q  159 agggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaatt----aatgcatttgaatttaattttattac 254  Q
    ||||||||| ||||||||||| | || ||  ||||||||||||||||| |  |||||  || ||| ||||    |||||||||||| |||||||| ||||    
T  10783569 agggaaatgctaacttgtgtcatcaagacataagttaatgagtcaaaaatggaaataatttattgtaattaatgaatgcatttgaaattaatttttttac 10783668  T
Q  255 tttttattaattgaatgcacaa 276  Q
    |||| |||||||||||| ||||    
T  10783669 ttttgattaattgaatgtacaa 10783690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 49044706 - 49044758
Alignment:
Q  190 aagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatt 242  Q
    |||||||||||||||||||| |||||| || ||| ||||||||||||||||||    
T  49044706 aagttaatgagtcaaaagtagaaatattttattgtaattaatgcatttgaatt 49044758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 276
Target Start/End: Complemental strand, 29867085 - 29866999
Alignment:
Q  190 aagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||| || ||||||||| |||||| || ||| ||| ||| |||||||||||||| || |||||||| ||||||| |||| ||||    
T  29867085 aagttaacgaatcaaaagtagaaatattttgttgtaataaatacatttgaatttaatatttttacttttgattaattaaatgaacaa 29866999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 9166160 - 9166280
Alignment:
Q  155 taaaagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattac 254  Q
    ||||||| ||||  ||||||||| | ||||||| ||| ||||||||||| ||||| |||| |  | ||  ||| ||||||||||||||| ||||| | ||    
T  9166160 taaaaggaaaatactaacttgtgcctttaaaactcaaattaatgagtcacaagtagaaatgttgtgttataatcaatgcatttgaatttgatttt-taac 9166258  T
Q  255 tttttattaattgaatgcacaa 276  Q
    |||| ||||| |||||||||||    
T  9166259 ttttaattaactgaatgcacaa 9166280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 29731001 - 29730960
Alignment:
Q  229 aatgcatttgaatttaattttattactttttattaattgaat 270  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  29731001 aatgcatttgaatttaatttttttacttttaattaattgaat 29730960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 37316136 - 37316217
Alignment:
Q  192 gttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgca 273  Q
    ||||||||||||||||| ||||||  || ||| |||||||  ||||||||||||||   | | |||| ||||||||||||||    
T  37316136 gttaatgagtcaaaagtgaaaataatttgttgtaattaatatatttgaatttaattccttgatttttgattaattgaatgca 37316217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 16304110 - 16304154
Alignment:
Q  232 gcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||| ||||||||||||| ||||||||  ||||||||||||||||    
T  16304110 gcatatgaatttaatttttttacttttgcttaattgaatgcacaa 16304154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 29855533 - 29855426
Alignment:
Q  162 gaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttat 261  Q
    ||||||||||||| || |||||| || ||||| ||||||||||| |||||||||| || ||| ||||||||||||| ||||||||||| || ||||| ||    
T  29855533 gaaatgttaacttatgcccttaagacacaagtaaatgagtcaaatgtaaaaatattttgttgtaattaatgcattt-aatttaatttt-tttcttttaat 29855436  T
Q  262 taattgaatg 271  Q
    ||||||||||    
T  29855435 taattgaatg 29855426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 36187500 - 36187604
Alignment:
Q  163 aaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttatt 262  Q
    ||||| ||||||||| | |||| |  ||||||||||| | |||||||||||||| || ||| |||||||||||||| |||||||||| |||||||| |||    
T  36187500 aaatgctaacttgtgcctttaagatacaagttaatgaattaaaagtaaaaatattttgttgtaattaatgcatttgtatttaatttttttacttttgatt 36187599  T
Q  263 aattg 267  Q
    |||||    
T  36187600 aattg 36187604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 30784379 - 30784284
Alignment:
Q  179 ccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaa-ttttattactttttattaattgaatgca 273  Q
    ||||||||| ||||||| | ||| |||||||||||||| || ||| |||||||| |||||||||||| |||| |||||||| ||||||||||||||    
T  30784379 ccttaaaacacaagttattaagttaaaagtaaaaatattttgttgtaattaatgtatttgaatttaattttttttacttttaattaattgaatgca 30784284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 30873124 - 30873010
Alignment:
Q  159 agggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttt 258  Q
    ||||||||| ||||||||| ||||||  | |||||||||||||||| ||||||  | | || ||  |||||||| |||||||||||||||| ||||||||    
T  30873124 agggaaatgctaacttgtgcccttaaggcacaagttaatgagtcaagagtaaattttttttgttataattaatgtatttgaatttaatttttttactttt 30873025  T
Q  259 tattaattgaatgca 273  Q
     ||||| ||||||||    
T  30873024 aattaactgaatgca 30873010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 141321 - 141408
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||||||||  ||||||  ||||| ||| ||| ||||||||||||||||||||||| | | |||||| |||||||||||||||||    
T  141321 caagttaatgagctaaaagtggaaataaattgttgtaattaatgcatttgaatttaattctttaacttttgattaattgaatgcacaa 141408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 9780819 - 9780768
Alignment:
Q  225 aattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  9780819 aattaatgcatttgaatttaatttttttatttttaattaattgaatgcacaa 9780768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 29429620 - 29429707
Alignment:
Q  189 caagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||||||| |||||||||||  |||||| || ||| ||||||| |||||||||||||||||   |||||| ||||||| |||||||||    
T  29429620 caagttaaagagtcaaaagtggaaatattttgttgtaattaatacatttgaatttaattttccaacttttaattaattaaatgcacaa 29429707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 36187646 - 36187756
Alignment:
Q  168 ttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttga--atttaattttattactttttattaat 265  Q
    ||||| ||||||||||| || |||||||||||||||||||||   |||| || |||  ||||||||||||||   |||  |||| |||||||||||||||    
T  36187646 ttaacatgtgtccttaagacacaagttaatgagtcaaaagtagggatattttgttgtgattaatgcatttgatttttttttttttttactttttattaat 36187745  T
Q  266 tgaatgcacaa 276  Q
    ||||| |||||    
T  36187746 tgaatacacaa 36187756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 12289015 - 12289101
Alignment:
Q  190 aagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||||||||||| ||||||||||| | | | ||| | ||||||||||||||||||||| | | |||||| ||||||||||| |||||    
T  12289015 aagttaatgagttaaaagtaaaaacaaaatgttgtagttaatgcatttgaatttaattctttaacttttgattaattgaatacacaa 12289101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 6809628 - 6809720
Alignment:
Q  163 aaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactt 256  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||||  |||||  || | | ||| ||||| ||||||||||||||| ||||||    
T  6809628 aaatgttaacttgtgtctttaaaacacaagttaaagagtcaaaagtggaaataatttgtcgtaatcaatgc-tttgaatttaatttttttactt 6809720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 6818560 - 6818665
Alignment:
Q  163 aaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttatt 262  Q
    ||||||||| ||||||| ||||| | ||||||||||||| |||| | ||||||  || ||| ||| |||| |||||||||||||||  ||| |||| |||    
T  6818560 aaatgttaatttgtgtcattaaagcacaagttaatgagttaaaaatgaaaataatttgttgtaatcaatgtatttgaatttaattt--ttatttttaatt 6818657  T
Q  263 aattgaat 270  Q
    ||||||||    
T  6818658 aattgaat 6818665  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 19961517 - 19961575
Alignment:
Q  157 aaagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaata 215  Q
    ||||||||||||||| |||||||||||  || ||||||||||| ||||||||| |||||    
T  19961517 aaagggaaatgttaatttgtgtccttatgacacaagttaatgaatcaaaagtagaaata 19961575  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 17025833 - 17025773
Alignment:
Q  216 tattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    |||| ||| ||| ||||||||||||||| ||||| ||| |||| |||| ||||||||||||    
T  17025833 tattattgtaatcaatgcatttgaattttatttttttatttttgattatttgaatgcacaa 17025773  T

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Target: scaffold0121 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 33984 - 34097
Alignment:
Q  160 gggaaatgttaacttgtgtccttaaaa--cccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttt 257  Q
    |||||||| |||||||||||| ||| |  | |||||||||| ||||||||||||||||| |  ||| ||||||| |||||||||||||| || ||| |||    
T  33984 gggaaatgataacttgtgtccataagatacacaagttaatgcgtcaaaagtaaaaatatttcattgtaattaatacatttgaatttaatatt-ttatttt 34082  T
Q  258 ttattaattgaatgc 272  Q
    | |||||||||||||    
T  34083 tgattaattgaatgc 34097  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 276
Target Start/End: Original strand, 42486524 - 42486626
Alignment:
Q  173 ttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgc 272  Q
    ||||||||||||  |  ||||||| |||| ||||||| |||| | || ||| ||||||||||||||||||||||| | |||||||| |||||| ||||||    
T  42486524 ttgtgtccttaatgcataagttaaggagt-aaaagtagaaatgttttgttgtaattaatgcatttgaatttaattcttttacttttaattaatagaatgc 42486622  T
Q  273 acaa 276  Q
    ||||    
T  42486623 acaa 42486626  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 270
Target Start/End: Original strand, 25186135 - 25186247
Alignment:
Q  158 aagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattc-ttgaaattaatgcatttgaatttaattttattactt 256  Q
    ||||||||| |||||||||| ||||||    |||||||||||  || ||||||||| |||||  ||| || |||||||||||||||||||||| | ||||    
T  25186135 aagggaaatattaacttgtgcccttaaggtacaagttaatgaaccataagtaaaaa-atatttattgtaactaatgcatttgaatttaattttttcactt 25186233  T
Q  257 tttattaattgaat 270  Q
    || |||||||||||    
T  25186234 ttgattaattgaat 25186247  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 1914578 - 1914664
Alignment:
Q  190 aagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaattt-aattttattactttttattaattgaatgcacaa 276  Q
    |||||||| ||||||||||| |||||| || ||  ||||||||||| ||||||| | |||| |||||||| ||||||||||| |||||    
T  1914578 aagttaat-agtcaaaagtagaaatattttgttctaattaatgcatatgaatttcattttttttacttttaattaattgaatacacaa 1914664  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 14441463 - 14441541
Alignment:
Q  193 ttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttattaattgaatgcacaa 276  Q
    ||||||| ||||||||| |||||| || | | ||||||||||||||||||||  |||||   |||||||||||||||| |||||    
T  14441463 ttaatgaatcaaaagtataaatattttgtagtaattaatgcatttgaattta--tttat---tttttattaattgaatacacaa 14441541  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 38666343 - 38666400
Alignment:
Q  158 aagggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaata 215  Q
    |||||||||||||||||||||||||||  | |||||| |  ||||||| |||||||||    
T  38666343 aagggaaatgttaacttgtgtccttaaggcacaagtttaaaagtcaaatgtaaaaata 38666400  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 276
Target Start/End: Original strand, 17958665 - 17958774
Alignment:
Q  162 gaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattactttttat 261  Q
    ||||||||||||||||  ||||| |  |||||||||||||||||| || |||||  ||  || ||||||||||||||| |||  |||| | |||||| ||    
T  17958665 gaaatgttaacttgtg--cttaagatacaagttaatgagtcaaaa-tagaaataatttgatgtaattaatgcatttgatttt--ttttttcacttttgat 17958759  T
Q  262 taattgaatgcacaa 276  Q
    ||||| |||||||||    
T  17958760 taattaaatgcacaa 17958774  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 66115 - 66229
Alignment:
Q  161 ggaaatgttaacttgtgtccttaaaacccaagttaatgagtcaaaagtaaaaatatattcttgaaattaatgcatttgaatttaattttattacttttta 260  Q
    |||||||||||| |||||| |||| || ||||||||||| ||||| |||  ||||| || ||| |||| ||||| ||  |||||||||| | ||||||||    
T  66115 ggaaatgttaacgtgtgtctttaagacacaagttaatgaatcaaatgtaggaatattttattggaattcatgca-ttacatttaatttt-taacttttta 66212  T
Q  261 -ttaattgaatgcacaa 276  Q
     | ||||||||||||||    
T  66213 gtgaattgaatgcacaa 66229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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