View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13503_high_3 (Length: 463)
Name: NF13503_high_3
Description: NF13503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13503_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 412
Target Start/End: Complemental strand, 27514224 - 27513835
Alignment:
| Q |
21 |
gtgtcttctccctcacactgttttccccttctttatcgtcctttccctcacctccttctccttgccaccatccaatcttcttccctttcttctctgattt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| |
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| T |
27514224 |
gtgtcttctccctcacactgttttccccttctttatcgtcctttccctcacctccttctccttgccaccatccgatcttcttctctttgttctctgattt |
27514125 |
T |
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| Q |
121 |
ttcaaattccgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaacagagacggaaa |
220 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |
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| T |
27514124 |
ttcaaattctgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtgggaagaggaaccgcagaaaaaaccagaaaggagacgaaga |
27514025 |
T |
|
| Q |
221 |
ccgaaatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcttcaaaagaagttttagaaacgtgct |
320 |
Q |
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|| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| |
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| T |
27514024 |
ccagaatgaaggaaccgctccgtcctccgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcgtcagaagaagttttagaaacatgct |
27513925 |
T |
|
| Q |
321 |
aagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttga |
412 |
Q |
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| T |
27513924 |
aagtcgaaagctcacgatgctactattgaaagagctatcgagctcggtgaagaggtt--ctctctctcactgaatggctgttgttgttttga |
27513835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
| Q |
242 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga |
337 |
Q |
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| T |
8674890 |
gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga |
8674989 |
T |
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| Q |
338 |
tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
388 |
Q |
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||||| | || |||||||||||||||||||||||||||||||||||||||| |
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| T |
8674990 |
tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc |
8675040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 27513807 - 27513766
Alignment:
| Q |
422 |
atttctgtgttgttgtagcttccagagaagaaggtgccgaag |
463 |
Q |
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| T |
27513807 |
atttctgtgttgtcgtagcttccagagaagaaggtgccgaag |
27513766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 463
Target Start/End: Original strand, 8675102 - 8675143
Alignment:
| Q |
422 |
atttctgtgttgttgtagcttccagagaagaaggtgccgaag |
463 |
Q |
| |
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| T |
8675102 |
atttctgtgttgttgtagcctccggagaagaaggtgccgaag |
8675143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 39209622 - 39209911
Alignment:
| Q |
1 |
caatcaccaccaacataaaggtgtcttctccctcacactgttttccccttctttatcgtcctttccctcacctccttctccttgccaccatccaatcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39209622 |
caatcaccaccaacataaaggtgtcttctccctcacactgttttccccttctttatcgtccttcccctcacctccttctccttgccaccatccaatcttc |
39209721 |
T |
|
| Q |
101 |
ttccctttcttctctgatttttcaaattccgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtgggaagaggaaccgcagaaaa |
200 |
Q |
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| T |
39209722 |
ttccctttcttctctgatttttcaaattccgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtgggaagaggaaccgcagaaaa |
39209821 |
T |
|
| Q |
201 |
aaccagaacagagacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
290 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39209822 |
aaccagaacagtgacggaaaccgaaatgaaggaactgctccgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
39209911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 317 - 453
Target Start/End: Original strand, 39209906 - 39210040
Alignment:
| Q |
317 |
tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttgannnn |
416 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
39209906 |
tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgttttga--tt |
39210003 |
T |
|
| Q |
417 |
nnnnnatttctgtgttgttgtagcttccagagaagaa |
453 |
Q |
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|||||||||||||||||||||||| ||||||| |
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| T |
39210004 |
tttttatttctgtgttgttgtagcttccatagaagaa |
39210040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 388
Target Start/End: Complemental strand, 24037194 - 24037047
Alignment:
| Q |
245 |
cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc |
340 |
Q |
| |
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||||||||| |||||| |||| |||||||||||||||||||||||||||| ||| |||||| || |||||| |||||||||||||||||||||| |
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| T |
24037194 |
cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt |
24037095 |
T |
|
| Q |
341 |
tgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
388 |
Q |
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|| | || |||| ||||||||| ||||||||||||||| ||||||||| |
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| T |
24037094 |
tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctc |
24037047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 24037323 - 24037276
Alignment:
| Q |
148 |
aaccttcccaaaccttctaattggctttcggtgggaagaggaaccgca |
195 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||||||| |||| |
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| T |
24037323 |
aaccttcccaaaccttatgatcggctttcggtgggaagaggaagcgca |
24037276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 423 - 463
Target Start/End: Complemental strand, 24036978 - 24036938
Alignment:
| Q |
423 |
tttctgtgttgttgtagcttccagagaagaaggtgccgaag |
463 |
Q |
| |
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| T |
24036978 |
tttctgtgttgttgtagcttccggagaaaaagctgccgaag |
24036938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 9460971 - 9461013
Alignment:
| Q |
148 |
aaccttcccaaaccttctaattggctttcggtgggaagaggaa |
190 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
9460971 |
aaccttcccaaaccttctgattggctttcggtgggaacaggaa |
9461013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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