View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13503_low_2 (Length: 538)
Name: NF13503_low_2
Description: NF13503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13503_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 29 - 523
Target Start/End: Complemental strand, 11647311 - 11646791
Alignment:
| Q |
29 |
atgaaaaactactatcggaaatgctccttatagcgaaatcatgcttcatgaaatcttcgcgacatgtgtaaaagctaa-----gaatgtttttt-gtaat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
11647311 |
atgaaaaactactatcggaaatgctccttatagcgaaatcatgcttcacgaaatctttgcgacatgtgtaaaagctaattcctgaatgtttttttgtaac |
11647212 |
T |
|
| Q |
123 |
tgcaacatatatggtgggccagannnnnnnnnnnnnngttagccttgttgttggctttcgcgatgcattcttgatgaattttctcgtgatgtatagcatc |
222 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||| |||| |||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11647211 |
tgcaacatgtatggtgggccaggctttttttttttca-ttacccttgctgttagctttcacgatgcattcttgatgaattttctcgtgatatatagcatc |
11647113 |
T |
|
| Q |
223 |
actccaa-----------------gaaaaataactaactaaccaacggttctaaactacatcttttcgatagctttagtctgcttccacgtgtctggact |
305 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
11647112 |
actccaattattatatatacataagaaaaataactaactgaccaacggttctaaactacatcttttcaatagcttaagcctgcttccacgtgtctggact |
11647013 |
T |
|
| Q |
306 |
cttaatcttgcttctttgccaaagatttgaattcttctagtcgaattaaagaactagtcgaaccactcctgtcgaaatctttattctccatcccgcaatt |
405 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11647012 |
cttaatcttgcttctttagcaatgatttgaattcctctagtcgaattaaagaactagtcgaaccactcctgtcgaaatctttattctccatcccgcaatt |
11646913 |
T |
|
| Q |
406 |
agagaatt----tcatggtcttgataaccaattttcttgtcgaatcacacacttaaaaatacaaactaacacatacccaccacatattatgtctttgttg |
501 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11646912 |
agagaatttcattcatggtcttgataaccaattttcttgtcgaatcacacgcttaaaaatacaaactaacacatacccaccacatattatgtctttgttg |
11646813 |
T |
|
| Q |
502 |
attaattttcttattataggca |
523 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11646812 |
attaattttcttattataggca |
11646791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 50706086 - 50706141
Alignment:
| Q |
171 |
tgttggctttcgcgatgcattcttgatgaattttctcgtgatgtatagcatcactc |
226 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50706086 |
tgttggctttcgtgatgcattctggatgaattttctcgtgatgtatagcatcactc |
50706141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 50705997 - 50706069
Alignment:
| Q |
63 |
gaaatcatgcttcatgaaatcttcgcgacatgtgtaaaagctaa-----gaatgttttttgtaattgcaacat |
130 |
Q |
| |
|
|||||||| ||||| ||||||| ||| ||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
50705997 |
gaaatcatccttcacgaaatctacgcaacatgtgtaaaagctaattcctgaatgttttttgtaactgcaacat |
50706069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 5062226 - 5062194
Alignment:
| Q |
403 |
attagagaatttcatggtcttgataaccaattt |
435 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
5062226 |
attaaagaatttcatggtcttgataaccaattt |
5062194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 2657505 - 2657399
Alignment:
| Q |
43 |
tcggaaatgctccttatagcgaaatcatgcttcatgaaatcttcgcgacatgtgtaaaagcta-----agaatgttttttgtaattgcaacatatatggt |
137 |
Q |
| |
|
|||||||||||| ||| | | ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| || ||||| |||||| |
|
|
| T |
2657505 |
tcggaaatgctctttacaacaaaatcatgcttcacgaaatctccgcgacatgtgtaaaagctatttcctgaatgttttttgtacctgtaacatgtatggt |
2657406 |
T |
|
| Q |
138 |
gggccag |
144 |
Q |
| |
|
||||||| |
|
|
| T |
2657405 |
gggccag |
2657399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 472
Target Start/End: Complemental strand, 14628531 - 14628471
Alignment:
| Q |
411 |
atttcatggtcttgataaccaattttcttgtcgaatcacacacttaaaaatacaaactaaca |
472 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
14628531 |
atttcatgatcttaataaccaattttcttgtcgaaacacacactt-aaaatacagactaaca |
14628471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 10704850 - 10704805
Alignment:
| Q |
172 |
gttggctttcgcgatgcattcttgatgaattttctcgtgatgtata |
217 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
10704850 |
gttgactttcgtgatgcattcttgagaaattttctcgtgatgtata |
10704805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University