View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13505_high_3 (Length: 532)
Name: NF13505_high_3
Description: NF13505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13505_high_3 |
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| [»] scaffold0026 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 25802728 - 25802346
Alignment:
| Q |
20 |
gtaggatcacccaaaacagctgaaatcacaatctgcaccgcaaatccagcaatctcacaacactttttcaccttctttcctttacttcctctacttcctc |
119 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802728 |
gtaggatcacccaaaaccgctgaaatcacaatctgcaccgcaaatccagcaatctcacaacactttttcaccttctttcctttacttcctctacttcctc |
25802629 |
T |
|
| Q |
120 |
tgcaattatgtgcagcgtacaatgtattctgtaaactaggaatagtggcgtcaagtttcctgctacttcctttaccatgtcccatatataagttgtacca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802628 |
tgcaattatgtgcagcgtacaatgtattctgtaaactaggaatagtggcctcaagtttcctgctacttcctttaccatgtcccatatataagttgtacca |
25802529 |
T |
|
| Q |
220 |
attttccaccagcatttccctcacacaagccacatgcaaattgtaactcttacagttcgatctataactccaactacgtccttttcttccgcaacggtga |
319 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25802528 |
attttccaccagcatttccctcacacaggccacatgcaaattgtaactcttacagttcgatctataactccagctacgtccttttcttccgcaacggtga |
25802429 |
T |
|
| Q |
320 |
catggtgaactcactttcctgtgaaggtaaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtg |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802428 |
catggtgaactcactttcctgtgaaggtaaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtg |
25802346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 184 - 363
Target Start/End: Complemental strand, 25816607 - 25816435
Alignment:
| Q |
184 |
acttcctttaccatgtcccatatataagttgtaccaattttccaccagcatttccctc--acacaagccacatgcaaattgtaactcttacagttcgatc |
281 |
Q |
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|||||||||||||||| |||||||||| ||| |||||| ||||||| ||||||||| |||||||| |||||||||||||||||| || | |
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| T |
25816607 |
acttcctttaccatgttccatatataaattgagccaattctccaccaacatttccctataacacaagcaacatgcaaattgtaactc---------gacc |
25816517 |
T |
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| Q |
282 |
tataactccaactacgtccttttcttccgcaacggtgacatggtgaactcactttcctgtgaaggtaaagtttcatttcccc |
363 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||| |
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| T |
25816516 |
tataactccagctacgtccttttcttccacaacggtgacatggtgaactcacttttctataaaggtaaagtttcatttcccc |
25816435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 516
Target Start/End: Complemental strand, 23244477 - 23244358
Alignment:
| Q |
397 |
tgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtct |
496 |
Q |
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|||||| ||||||||||||||| |||| || ||||| | ||| || | ||||| ||| ||||| || ||| ||||||||| ||||||| ||||| |
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| T |
23244477 |
tgggtgaagacgaaatgtttctcttatgattgcttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtcg |
23244378 |
T |
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| Q |
497 |
atttcttcacgagctttttg |
516 |
Q |
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|||||||||||||||||||| |
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| T |
23244377 |
atttcttcacgagctttttg |
23244358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 23223331 - 23223371
Alignment:
| Q |
410 |
aatgtttcttttattatggcttgaatataaggaagatttgg |
450 |
Q |
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|||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
23223331 |
aatgtttcttttataatggcttgtatataaggaaggtttgg |
23223371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 132 - 325
Target Start/End: Original strand, 108620 - 108813
Alignment:
| Q |
132 |
cagcgtacaatgtattctgtaaactaggaatagtggcgtcaagtttcctgctacttcctttaccatgtcccatatataagttgtaccaattttccaccag |
231 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108620 |
cagcgtacaatgtattctgtaaactaggaataatggcctcaagtttcctgctacttcctttaccatgtcccatatataagttgtaccaattttccaccag |
108719 |
T |
|
| Q |
232 |
catttccctcacacaagccacatgcaaattgtaactcttacagttcgatctataactccaactacgtccttttcttccgcaacggtgacatggt |
325 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||| |
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| T |
108720 |
catttccctcacacaagccacatgtaaattgtaactcttacagttcgatctataactccagctacgtgcttttctcccacaacggtgacatggt |
108813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 105726 - 105845
Alignment:
| Q |
20 |
gtaggatcacccaaaacagctgaaatcacaatctgcaccgcaaatccagcaatctcacaacac--tttttcaccttctttcctttacttcctctacttcc |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
105726 |
gtaggatcacccaaaaccgctgaaatcacaatctgcaccgcaaatccagcaatctcacaacactttttttcaccttctttcctttacttcctctacttcc |
105825 |
T |
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| Q |
118 |
tctgcaattatgtgcagcgt |
137 |
Q |
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|||||||||||||||||||| |
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| T |
105826 |
tctgcaattatgtgcagcgt |
105845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 321 - 402
Target Start/End: Original strand, 112104 - 112185
Alignment:
| Q |
321 |
atggtgaactcactttcctgtgaaggtaaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtg |
402 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
112104 |
atggtgaactcactttcctgtaaaggtaaagtttcatttccccgtcgttaagaaccatcggcagctttgcgcaacacgggtg |
112185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 397 - 516
Target Start/End: Original strand, 9398918 - 9399037
Alignment:
| Q |
397 |
tgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtct |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9398918 |
tgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtct |
9399017 |
T |
|
| Q |
497 |
atttcttcacgagctttttg |
516 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
9399018 |
atttcttcacgagctttttg |
9399037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 397 - 516
Target Start/End: Original strand, 9381493 - 9381612
Alignment:
| Q |
397 |
tgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtct |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
9381493 |
tgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggaccgtcagattcatctactagtctatttttccctactatattgtct |
9381592 |
T |
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| Q |
497 |
atttcttcacgagctttttg |
516 |
Q |
| |
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|||||||||||||||||||| |
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| T |
9381593 |
atttcttcacgagctttttg |
9381612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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