View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13505_high_5 (Length: 388)
Name: NF13505_high_5
Description: NF13505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13505_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 388
Target Start/End: Complemental strand, 46494613 - 46494234
Alignment:
| Q |
9 |
gagatgaacctcaagactcaaaccaaagctcaaacaccatcattcatcatggtttcatccaacaaggtattattcttattcctcttcatctctcgtgaat |
108 |
Q |
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| T |
46494613 |
gagataaacctcgagactcaaaccaaagctcaaacaccatcattcatcatggtttcatccaacaaggtattattcttattcctcttcatctctcgtgaat |
46494514 |
T |
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| Q |
109 |
tttttcgattatattattttcttagctttgattcacaaaattataccattttccctgaaaataattatgttgttgttaatgattgtaccataaattattt |
208 |
Q |
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| T |
46494513 |
tttttcgattatatcattttcgtagctttgattcaaaaaattataccattttccctgaaaataattatgttgttgtcaatgattgtaccataaattattt |
46494414 |
T |
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| Q |
209 |
gaattcaacttccaccgtttctctgtgttgataattttaagtttctgtaagaaaattacaagcaaaaaattactttttagaaaaataactaatgtatctg |
308 |
Q |
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| T |
46494413 |
gaattcaacttccaccgtttctctgtgttgataattttaagtttctgtaagaaaattacaagcaaaaaattactttttagataaataactaatgtatctg |
46494314 |
T |
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| Q |
309 |
gtctgaattatcgaccaaatacaatacatttgttattaaatgaatctaaaagtgaaatgttcctcataattaagaccgta |
388 |
Q |
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| T |
46494313 |
gtctgaattatcgaccaaatacaatacatttgttattaaatgaatctaaaagtgaaatgttcctcataattaagaccgta |
46494234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 331
Target Start/End: Complemental strand, 1755957 - 1755918
Alignment:
| Q |
292 |
aataactaatgtatctggtctgaattatcgaccaaataca |
331 |
Q |
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| T |
1755957 |
aataactaatgtatctggtctgtattatggaccaaataca |
1755918 |
T |
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