View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13505_high_6 (Length: 337)
Name: NF13505_high_6
Description: NF13505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13505_high_6 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 2713730 - 2714050
Alignment:
| Q |
17 |
actattactgctcccactatcacagtagctataatgattgatgtaatatttctcttcccatgaatgccatctgtatgagtcccatctgtatgtatagctg |
116 |
Q |
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| T |
2713730 |
actattactgctcccactatcacagtagctataatgattgatgtaatatttctcttcccatgaatgccatctgtatgagtcccatctgtatgtatagctg |
2713829 |
T |
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| Q |
117 |
ttaaaaatgattagtttagaatctggttattggactagaggttgaagaacaaaacctgactagttgaaaaccgagttcttactaaccgagttctgaataa |
216 |
Q |
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| T |
2713830 |
ttaaaaatgattagtttagaatctggttattggactagaagttgaagaataaaacctgactagttgaaaaccgagttcttactaaccgagttctgaataa |
2713929 |
T |
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| Q |
217 |
gcttggcgtaagtaaagatcgacgcctccactagttgaaaacctgactatgtcaattaatttaccactccaagtcaagcacctaattccataatcaaatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2713930 |
gcttggcgtaagtaaagatcgacgcctccactagttgaaaacctgactatgtcaattaatttaccactccaagtcaagcacctaattccataatcaaatg |
2714029 |
T |
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| Q |
317 |
cataagcaacacaagaacaat |
337 |
Q |
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| T |
2714030 |
cataagcaacacaagaacaat |
2714050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 205 - 337
Target Start/End: Original strand, 2725278 - 2725407
Alignment:
| Q |
205 |
agttctgaataagcttggcgtaagtaaagatcgacgcctccactagttgaaaacctgactatgtcaattaatttaccactccaagtcaagcacctaattc |
304 |
Q |
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| T |
2725278 |
agttctgaatacgcttggcgtatgtaaagatcaatgcctccact---tgaaaacctgactatgtcgattaaattaccactccaagtcaagcaccggattc |
2725374 |
T |
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| Q |
305 |
cataatcaaatgcataagcaacacaagaacaat |
337 |
Q |
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| T |
2725375 |
catcatcatatgcataagcaacacaagaacaat |
2725407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 2708888 - 2709015
Alignment:
| Q |
207 |
ttctgaataagcttggcgtaagtaaagatcgacgcctccactagttgaaaacctgactatgtcaattaatttaccactccaagtcaagcacctaattcca |
306 |
Q |
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|||||||||||||||||||| ||||||||| | |||||||| || |||||||||||||||||||| |||| |||||||||| ||||||| |||||| |
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| T |
2708888 |
ttctgaataagcttggcgtatgtaaagatcaatgcctccacctgt---aaacctgactatgtcaattagtttatcactccaagttaagcaccggattcca |
2708984 |
T |
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| Q |
307 |
taatcaaatgcataagcaacacaagaacaat |
337 |
Q |
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| T |
2708985 |
ttatcatatgcataagcaacacaagaacaat |
2709015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 205 - 323
Target Start/End: Original strand, 2719885 - 2720000
Alignment:
| Q |
205 |
agttctgaataagcttggcgtaagtaaagatcgacgcctccactagttgaaaacctgactatgtcaattaatttaccactccaagtcaagcacctaattc |
304 |
Q |
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|||||||||||||||||||||| |||||||||| |||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
2719885 |
agttctgaataagcttggcgtatgtaaagatcggtgcctgcact---tgaaaacctgactatgtcaattaaattaccactccaagtcaagcactgaattc |
2719981 |
T |
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| Q |
305 |
cataatcaaatgcataagc |
323 |
Q |
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||| ||||||||| ||||| |
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| T |
2719982 |
catcatcaaatgcgtaagc |
2720000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 324
Target Start/End: Original strand, 2746758 - 2746875
Alignment:
| Q |
204 |
gagttctgaataagcttggcgtaagtaaagatcgacgcctccactagttgaaaacctgactatgtcaattaatttaccactccaagtcaagcacctaatt |
303 |
Q |
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|||||||||||| |||||||||| ||||||||| | ||||||||| ||||||||||||||| |||||||| |||||||||||||| ||||| | |||| |
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| T |
2746758 |
gagttctgaatacgcttggcgtatgtaaagatcaatgcctccact---tgaaaacctgactatatcaattaaattaccactccaagttaagcaacgaatt |
2746854 |
T |
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| Q |
304 |
ccataatcaaatgcataagca |
324 |
Q |
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|||| |||||||||||||||| |
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| T |
2746855 |
ccattatcaaatgcataagca |
2746875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 2708682 - 2708747
Alignment:
| Q |
42 |
tagctataatgattgatgtaatatttctcttcccatgaatgccatctgtatgagtcccatctgtat |
107 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |
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| T |
2708682 |
tagctatgatgattgatgtaatatttctcttcccgtgaatgccatgtgtatgaatcccatctgtat |
2708747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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