View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13505_low_1 (Length: 793)
Name: NF13505_low_1
Description: NF13505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13505_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 35673796 - 35673270
Alignment:
| Q |
1 |
tccacctgaatccgacaacaacgaatatttttgacaccttatctgatactgcaatcccactataaacgggtaaaacccacccattgaaccgggtttattt |
100 |
Q |
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| T |
35673796 |
tccacctgaatccgacaacaacgaatatttttgacaccttatctgatactgcaatcccactataaacgggtaaaacccacccattgaaccgggtttattt |
35673697 |
T |
|
| Q |
101 |
cctggcaaacactcagaaacccacataatcgaactaaaccggttcgagtcatcaccaaccgggttctcaacccccaaaccattcatcaacacatcaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35673696 |
cctggcaaacactcagaaacccacataatcgaactaaaccggttcgagtcatcaccaaccgggttctcaacccccaaaccattcatcaacacatcaataa |
35673597 |
T |
|
| Q |
201 |
tattcaaacctagtttctcaagtgcacatgcaaactcgctgagtgattctagttttatctggttcgactcggttgaacacaacgagtcgaactggaaccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35673596 |
tattcaaacctagtttctcaagtgcacatgcaaactcgctgagtgattctagttttatctggttcgactcggttgaacacaacgagtcgaactggaaccg |
35673497 |
T |
|
| Q |
301 |
gaacgactcaacgagtttttcttcgtcgttgtcgttgtcaccttcgtaaccgaaaggccagttttgagggaagaatgattctttttgatcatgtgaaagg |
400 |
Q |
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| T |
35673496 |
gaacgactcaacgagtttttcttcgtcgttgtcgttgtcaccttcgtaaccgaaaggccagttttgagggaagaatgattctttttgatcatgtgaaagg |
35673397 |
T |
|
| Q |
401 |
ttgaagagtttgagtgactctgactcagccaagttggcgagttttgaagaaactgagtgatcagtgaattgaataaaaccaagttgagaaatggaggaga |
500 |
Q |
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| T |
35673396 |
ttgaagagtttgagtgactctgactcagccaagttggcaagttttgaagaaactgagtgatcagtgagttgaataaaaccaagttgagaaatggaggaga |
35673297 |
T |
|
| Q |
501 |
tgagtttttctggtgtgagtgatgaaa |
527 |
Q |
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| T |
35673296 |
tgagtttttctggtgtgagtgatgaaa |
35673270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 714 - 784
Target Start/End: Complemental strand, 35673095 - 35673025
Alignment:
| Q |
714 |
agcctccaccatgaaggttttgtggtagtatttgatgagtgtgagttgaagatgccatgaatatgatgatg |
784 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35673095 |
agcctccaccatgaaggttttgtggtagtatttgatgagtgtgagttgaagatgccatgaatatgatgatg |
35673025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 602 - 648
Target Start/End: Complemental strand, 35673195 - 35673149
Alignment:
| Q |
602 |
cggtggaggaggcgggagagtgcatcagcagcggtggaagttgagag |
648 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35673195 |
cggtggaggaggcgggagagtgcatcagcagcggtggaagttgagag |
35673149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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