View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13505_low_2 (Length: 557)
Name: NF13505_low_2
Description: NF13505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13505_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Complemental strand, 5688065 - 5687552
Alignment:
| Q |
18 |
tgaagaaggtgagatttctgattatgcttcatttattatccaccactattcttccttctggttccactgctccattttcatttcatcactcttcactaca |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
5688065 |
tgaagaaggtgagatttctgattttgcttcatttattatccaccactgttcttccttctggttccactgctccattttcatttcatcactcttcactata |
5687966 |
T |
|
| Q |
118 |
aaatcatcctcatcgttcaccactgttcttccctcttacaggttgtgttatcaccatttccagaagnnnnnnnnngttacccttttaatgnnnnnnnctt |
217 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| || |
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| T |
5687965 |
aaatcaacctcatcgtccaccactgttcttccctcttataggttgtgttatcaccattcccagaa---aaaaaaagttacccttttaatgttttttt-tt |
5687870 |
T |
|
| Q |
218 |
cttctcaatctttgtcccttttctctttgacactcttatagatagtgttcagattcaaattcattcatataaacgtgagattcagatttagattccaaat |
317 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5687869 |
attctcaatctttgacccttttctctttgacacttttatagatagtgttcagattcggattcattcatataaacgtgagattcagatttagattccaaat |
5687770 |
T |
|
| Q |
318 |
gaagaatcgaagcgagattatcaagaatcagtgggcttacgacatggatggatggacggtggttggtttgggaggcggtggaggagtgaacagtgatgat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||||| |
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|
| T |
5687769 |
aaagaatcgaagcgagattatcaagaatcagtgggcttacgacatgga----tggacggtggttggtgtgggaggcagtggaggagtgaacggtgatgat |
5687674 |
T |
|
| Q |
418 |
ttagttggtggtggttggttcatggtgaaaatgagggaaggagagttagtgttgctatggttgggttctgtgttgtatgtgacacttaaaaattatggtg |
517 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||||| |
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|
| T |
5687673 |
ttagttggtggtggttgtttcatggtgaaaatgagggaaggagagttagtgttgctctggctgggttctgtgttgtatacaatgcttaaaaattatggtg |
5687574 |
T |
|
| Q |
518 |
atttatgtgtaataagtctgtg |
539 |
Q |
| |
|
|||||||| |||||||| |||| |
|
|
| T |
5687573 |
atttatgtataataagtgtgtg |
5687552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 265 - 473
Target Start/End: Original strand, 22622546 - 22622752
Alignment:
| Q |
265 |
ttcagattcaaattcattcatataaacg---tgagattcagatttagattccaaatgaagaatcgaagcgagattatcaagaatcagtgggcttacgaca |
361 |
Q |
| |
|
|||| ||||| |||||||||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
22622546 |
ttcaaattcagattcattcatataaacactatcagattcagatttagactcttacagaagaatcgaagcgagattatcaagaatcgatgggcttacgaca |
22622645 |
T |
|
| Q |
362 |
tggatggatggacggtggttggtttgggaggcggtggaggagtgaacagtgatgatttagttggtggtggttggttcatggtgaaaatgagggaaggaga |
461 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
22622646 |
tggatggatc-acggtgtttggtgtgggaggcggtgg----gtggacggtgatgatttagttggtggtggttgtttcatggtgaaaatgagagaaggaga |
22622740 |
T |
|
| Q |
462 |
gttagtgttgct |
473 |
Q |
| |
|
| ||||||||| |
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|
| T |
22622741 |
gcgagtgttgct |
22622752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Original strand, 46674163 - 46674664
Alignment:
| Q |
18 |
tgaagaaggtgagatttctgattatgcttcatttattatccaccactattcttccttctggttccactgctccattttcatttcatcactcttcactaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
46674163 |
tgaagaaggtgagatttctgattatgcttcatttattatccaccactgttcttccttctggttccactgttccattttcatttcatcactcttcactaca |
46674262 |
T |
|
| Q |
118 |
aaatcatcctcatcgttcaccactgttcttccctcttacaggttgtgttatcaccatttccagaagnnnnnnnnngttacccttttaatgnnnnnnnctt |
217 |
Q |
| |
|
|||||| ||||||||| |||||||||||| || ||||| ||||||||||||||||||| | |||| ||||||||||||||| || |
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|
| T |
46674263 |
aaatcaacctcatcgtccaccactgttctaccttcttataggttgtgttatcaccattcctagaa-----aaaaagttacccttttaatgtttttttttt |
46674357 |
T |
|
| Q |
218 |
cttctcaatctttgtcccttttctctttgacactcttatagatagtgttcagattcaaattcattcatataaacgtgagattcagatttagattccaaat |
317 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
46674358 |
cttctcaatctttgacccttttctctttgacactcttatagatagtgttcagattca------ttcatataaacgtgagattcagatttagattccaaat |
46674451 |
T |
|
| Q |
318 |
gaagaatcgaagcgagattatcaagaatcagtgggcttacgacatggatggatggacggtggttggtttgggaggcggtggaggagtgaacagtgatgat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||| |||||||| |
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|
| T |
46674452 |
aaagaatcgaagcgagattatcaagaatcagtgggcttacgacatgg----atggacggtggttggtgtgggaggcggtgaaagagtgaacggtgatgat |
46674547 |
T |
|
| Q |
418 |
ttagttggtggtggttggttcatggtgaaaatgagggaaggagagttagtgttgctatggttgggttctgtgttgtatgtgacacttaaaaattatggtg |
517 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
46674548 |
ttagttggtggtggttgtttcatgatgaaaatgagggaaggagagttagtgttgctatggatggtttctgtgttgtatgcgatgcttaaaaattatggtg |
46674647 |
T |
|
| Q |
518 |
atttatgtgtaataagt |
534 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
46674648 |
atttatgtgtaataagt |
46674664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 6663638 - 6663606
Alignment:
| Q |
18 |
tgaagaaggtgagatttctgattatgcttcatt |
50 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
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|
| T |
6663638 |
tgaagaaggtgagatttctgattctgcttcatt |
6663606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 539
Target Start/End: Original strand, 31624585 - 31625120
Alignment:
| Q |
17 |
atgaagaaggtgagatttctgattatgcttcatttattatccaccactattcttccttctggttccactgctccattttcatttcatcactcttcactac |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31624585 |
atgaagaatgtgagatttctgattatgcttcatttattatccaccaatgttcttccttctcgttccactgctccattttcatttcatcactcttcactac |
31624684 |
T |
|
| Q |
117 |
aaaatcatcctcatcgttcaccactgttcttccctcttacaggttgtgttatcaccatttccagaagnnnnnnnnngttacccttttaatgnnnnnnnct |
216 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| | |
|
|
| T |
31624685 |
aaaatcaacctcattgtccaccactgttcttccctcttacaagttgtgttatcaccattcccagaa----aaaaaagttacccttttaatgttatttttt |
31624780 |
T |
|
| Q |
217 |
tcttctcaatctttgtcccttttctctttgacactcttatagatagtgttcagattcaaattcattcatataaa---------------------cgtga |
295 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
31624781 |
tcttctcaatctttgacccttttctctttgacactcttatagatagtgttcagattcagattcattcatataaatgtgagattcattcatataaacgtga |
31624880 |
T |
|
| Q |
296 |
gattcagatttagattccaaatgaagaatcgaagcgagattatcaagaatcagtgggcttacgacatggatggatggacggtggttggtttgggaggcgg |
395 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
31624881 |
gattcagaattagattccaaatgaagaatcaaagtgagattatcaagaatcagtgggcttacgacatgg----atggacggtggttggtgtgggaggcgg |
31624976 |
T |
|
| Q |
396 |
tggaggagtgaacagtgatgatttagttggtggtggttggttcatggtgaaaatgagggaaggagagttagtgttgctatggttgggttctgtgttgtat |
495 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
31624977 |
tggaggagtgaacggtgattatttagttggtggtggttgtttcatggtgaaaatgagggaaggagagttagtgttgctttggctgggttctgtgttgtat |
31625076 |
T |
|
| Q |
496 |
gtgacacttaaaaattatggtgatttatgtgtaataagtctgtg |
539 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31625077 |
gcgatgcttaaaaattatggtgatttatgtgtaataagtgtgtg |
31625120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 219 - 452
Target Start/End: Original strand, 40250650 - 40250885
Alignment:
| Q |
219 |
ttctcaatctttgtcccttttctctttgacactcttatagatagt---gttcagattcaaattcattcatataaacgtgagattcagatttagattccaa |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| || | ||||||||||| ||||||||| |||||| ||||||||||||||||| ||| | |
|
|
| T |
40250650 |
ttctcaatctttgacccttttctctttgacactcttatatattatcatgttcagattcagattcattcacataaacatgagattcagatttagactccga |
40250749 |
T |
|
| Q |
316 |
atgaagaatcgaagcgagattatcaagaatcagtgggcttacgacatggatggatggacggtggttggtttgggaggcggtggaggagtgaacagtgatg |
415 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||| |||||||||||| || |||| | |
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|
| T |
40250750 |
atgaagaatcgaagtgagattatcaagaatctatgggcttacgacatggatggat-cacaatggttggtgtgggagggggtggaggagtggacggtgacg |
40250848 |
T |
|
| Q |
416 |
atttagttggtggtggttggttcatggtgaaaatgag |
452 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40250849 |
atttagttggtggtggttgtttcatggtgaaaatgag |
40250885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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