View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13505_low_7 (Length: 277)
Name: NF13505_low_7
Description: NF13505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13505_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 7069172 - 7068920
Alignment:
| Q |
19 |
gtatgagtggtattggaaagacaactattgcagaagaagtatatagcatgctatgttcggagtatagtggttgttacttcaaggccaatgtaagagaaga |
118 |
Q |
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| T |
7069172 |
gtatgagtggtattggaaagacaactattgcagaagaagtatatagcatgctatgttcggagtatagtggttgttacttcaaggccaatgtaagagaaga |
7069073 |
T |
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| Q |
119 |
atgtagaagacatggaataatacatttaaagaaagagcttttttctactctattaggggaacaagatttgaaaattgacacgccacatagattaccctat |
218 |
Q |
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| T |
7069072 |
atgtagaagacatggaataatacatttaaagaaaaagcttttttctactctattaggggaacaagatttgaaaattgacacgccacatagattgccctat |
7068973 |
T |
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| Q |
219 |
cgcgattttgtgaggcttcgcactatgaaggttcttgttgttcttgatgatgt |
271 |
Q |
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| T |
7068972 |
cgcgattttgtgaggcttcgaactatgaaggttcttgttgttcttgacgatgt |
7068920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 7093115 - 7092941
Alignment:
| Q |
17 |
cagtatgagtggtattggaaagacaactattgcagaagaagtatatagcatgctatgttcggagtatagtggttgttacttcaaggccaatgtaagagaa |
116 |
Q |
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| T |
7093115 |
cagtatgagtggtataggaaagacaattattgcagaagaagtatataagaggctatgttctgaatatgaacgttgttactttaatgcgaatataagagaa |
7093016 |
T |
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| Q |
117 |
gaatgtagaagacatggaataatacatttaaagaaagagcttttttctactctattaggggaacaagatttgaaa |
191 |
Q |
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| T |
7093015 |
gaatggggaggacatgtaaatatgtatttaaagaaagatctttattctactctattaggggaacaagatttgaaa |
7092941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 7081725 - 7081549
Alignment:
| Q |
21 |
atgagtggtattggaaagacaactattgcagaagaagtatatagcatgctatgttcggagtatagtggttgttacttcaaggccaatgtaagagaagaat |
120 |
Q |
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|||||||||||||||||||||| ||||| |||| ||||||| | ||||||||| || ||| |||||||||||| ||||| ||| |||| ||||||| |
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| T |
7081725 |
atgagtggtattggaaagacaattattgtcgaaggcgtatataagaggctatgttctgaatatgatggttgttactttaaggctaatataagtgaagaat |
7081626 |
T |
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| Q |
121 |
gtagaagacatggaataatacatttaaagaaagagcttttttctactctattaggggaacaagatttgaaaattgac |
197 |
Q |
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| T |
7081625 |
ggggaggacatgaaaatatgtatttaaagaaagatattttttctactttattaggagaacataatttgaaatttgac |
7081549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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