View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13505_low_8 (Length: 262)
Name: NF13505_low_8
Description: NF13505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13505_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 27265729 - 27265853
Alignment:
| Q |
123 |
atgaaataataggagatgatgacgtggtcattgtggaaacctttgattctcaagactatgttacggatgataagaaggttgaagatggagttaagattga |
222 |
Q |
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| T |
27265729 |
atgaaataataggagatgatgacgtggtcattgtggaaacctttgattctcaagactatgttagtgatgataagaaggttgaagatggagttaagattga |
27265828 |
T |
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| Q |
223 |
agttgatagccttggacttgatgat |
247 |
Q |
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| T |
27265829 |
agttgatagccttggacttgatgat |
27265853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 27261272 - 27261384
Alignment:
| Q |
19 |
ttttgtactatgggcaccacattatcgagataatgcacatcccgaagattatagatgtatccatatgatgattgtttataatgaactcagtcggatggca |
118 |
Q |
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| T |
27261272 |
ttttgtactatgggcaccacattatcgagataatgtacatcctgaagattatagatgtatccatatgatgattgtttataatgaacttagtcgggtggca |
27261371 |
T |
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| Q |
119 |
tttaatgaaataa |
131 |
Q |
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| T |
27261372 |
tttaatgaaataa |
27261384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 12124095 - 12124149
Alignment:
| Q |
190 |
tgataagaaggttgaagatggagttaagattgaagttgatagccttggacttgat |
244 |
Q |
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| T |
12124095 |
tgataagaatgttgaagatggagtaaaggtttaagttgatagtcttggaattgat |
12124149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 35479106 - 35479049
Alignment:
| Q |
190 |
tgataagaaggttgaagatggagttaagattgaagttgatagccttggacttgatgat |
247 |
Q |
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| T |
35479106 |
tgataagaaggctgaagatggagtcaagattcaagttgatagccttggacttgatgat |
35479049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 13750714 - 13750751
Alignment:
| Q |
190 |
tgataagaaggttgaagatggagttaagattgaagttg |
227 |
Q |
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| T |
13750714 |
tgataagaaggttgaagatggaatcaagattgaagttg |
13750751 |
T |
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