View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13506_high_12 (Length: 221)
Name: NF13506_high_12
Description: NF13506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13506_high_12 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 172151 - 172338
Alignment:
| Q |
17 |
acaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaagcttcgtttggtgtggctttaagagaagagcaacattttccttctaga |
116 |
Q |
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| T |
172151 |
acaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaagcttcgtttggtgtggctttaagagaagagcaacattttccttctaga |
172250 |
T |
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| Q |
117 |
aacttttcctttacacaccccttgcatgtgatgattcatgtcagactttgtttatggtctttatctgagctatttgcttataattcat |
204 |
Q |
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| T |
172251 |
aacgtttcctttacacacccgtttcatgtgatgattcatgtcacactttgtttatggtctttatctgagctatttgcttataattcat |
172338 |
T |
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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 31045115 - 31045049
Alignment:
| Q |
136 |
ccttgcatgtgatgattcatgtcagactttgtttatggtctttatctgagctatttgcttataattcat |
204 |
Q |
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| T |
31045115 |
ccttgcatgagatgattcatgtcagact--gtttatggtctttatctgagctctttgcttatagttcat |
31045049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 31045221 - 31045134
Alignment:
| Q |
17 |
acaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaagcttcgtttggtgtggctttaagagaagagcaacattttcctt |
111 |
Q |
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| T |
31045221 |
acaaaaagtttttaatgtgaagatgaagacttgttatatgcc------gcaagcttcgtttggtgaggctttaggagaatagcaac-ttttcctt |
31045134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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