View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13506_high_13 (Length: 211)
Name: NF13506_high_13
Description: NF13506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13506_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 34697926 - 34697745
Alignment:
| Q |
17 |
aagtttaaagtcaactatgtcgttagaactacttaccagcagtgtactcaaagactactacaacggtcatgactgcccacatagcatttcttccaactcc |
116 |
Q |
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| T |
34697926 |
aagtttaaagtcaactatgtcgttagaactacttaccagcagtgtactcaaagactactacaacggtcatgactgcccacatagcatttcttccaactcc |
34697827 |
T |
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| Q |
117 |
atcatacaaaggattcaagtagtagaaaagtgacacagcagtaagtgctattcctactttcaaacaatggatgaattttctt |
198 |
Q |
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| T |
34697826 |
atcatacaaaggattcaagtagtagaaaagtgacacagcagtaagtgctattcctactttcaaacaatggatgaattttctt |
34697745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 34681460 - 34681306
Alignment:
| Q |
44 |
actacttaccagcagtgtactcaaagactactacaacggtcatgactgcccacatagcatttcttccaactccatcatacaaaggattcaagtagtagaa |
143 |
Q |
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||||| ||||||||||||||||||| ||||| | || |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||| || |
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| T |
34681460 |
actacgtaccagcagtgtactcaaacactacaatcactgtcatgacagcccacatagcatttcttccaacaccatcatataaaggtttcaagtagtaaaa |
34681361 |
T |
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| Q |
144 |
aagtgacacagcagtaagtgctattcctactttcaaacaatggatgaattttctt |
198 |
Q |
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| T |
34681360 |
aagtgacacagcagtaagtgctattcctactttcaaacaatggatgaattttctt |
34681306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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