View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13506_high_6 (Length: 383)
Name: NF13506_high_6
Description: NF13506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13506_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 90 - 370
Target Start/End: Complemental strand, 12572207 - 12571929
Alignment:
| Q |
90 |
ccccaaagttactctaacacaattttgcgtctttttattttgttataatttataggttggcacagtatttgtagctatcctaaggttcaattttgagtat |
189 |
Q |
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| T |
12572207 |
ccccaaagttagtctaacacaattttt-gtctttttattttgttataatttataggttggcacagtgtttgtagctatcctaaggttcaattttgagtat |
12572109 |
T |
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| Q |
190 |
attttgttgcagttttttaggctgaatattttttgcatagttagttatattagcaataggttctttgcagacaagcttttggtattttaaattcaatgtg |
289 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12572108 |
attttgttgcagttttttaggctggatattttttgcatagttagttatattagcaataggttctttgtagacaagcttttggtattttaaattcaatgtg |
12572009 |
T |
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| Q |
290 |
tctttaaaaattgaactcttaacaaatgatatatctttgtatgttcatggttagtttacctttctttttaaaacttttgat |
370 |
Q |
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| T |
12572008 |
tctttaaaaattgaactcttaacaaatgatatatctttatatgttcatggttag-ttacctttctttttaaaacttttgat |
12571929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 90 - 370
Target Start/End: Complemental strand, 13548671 - 13548393
Alignment:
| Q |
90 |
ccccaaagttactctaacacaattttgcgtctttttattttgttataatttataggttggcacagtatttgtagctatcctaaggttcaattttgagtat |
189 |
Q |
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| T |
13548671 |
ccccaaagttagtctaacacaattttt-gtctttttattttgttataatttataggttggcacagtgtttgtagctatcctaaggttcaattttgagtat |
13548573 |
T |
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| Q |
190 |
attttgttgcagttttttaggctgaatattttttgcatagttagttatattagcaataggttctttgcagacaagcttttggtattttaaattcaatgtg |
289 |
Q |
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| T |
13548572 |
attttgttgcagttttttaggctggatattttttgcatagttagttatattagcaataggttctttgtagacaagcttttggtattttaaattcaatgtg |
13548473 |
T |
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| Q |
290 |
tctttaaaaattgaactcttaacaaatgatatatctttgtatgttcatggttagtttacctttctttttaaaacttttgat |
370 |
Q |
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| T |
13548472 |
tctttaaaaattgaactcttaacaaatgatatatctttatatgttcatggttag-ttacctttctttttaaaacttttgat |
13548393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 188 - 370
Target Start/End: Original strand, 4293384 - 4293565
Alignment:
| Q |
188 |
atattttgttgcagttttttaggctgaatattttttgcatagttagttatattagcaataggttctttgcagacaagcttttggtattttaaattcaatg |
287 |
Q |
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| T |
4293384 |
atattttgttgcagttttttaggttggatattttttgcatagttagttatattagcaataggttctttgcagacaagcttttggtattttaaattcaatg |
4293483 |
T |
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| Q |
288 |
tgtctttaaaaattgaactcttaacaaatgatatatctttgtatgttcatggttagtttacctttctttttaaaacttttgat |
370 |
Q |
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| T |
4293484 |
tgtctttaaaaattgaactcttaacaaatgatatatctttatatgttcatggttag-ttacctttctttttaaaacttttgat |
4293565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 770678 - 770754
Alignment:
| Q |
16 |
cattactttccttctctt----gactttagacgttcgtgaatgtgatttttacttga-tatattgctataaatctta |
87 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
770678 |
cattactttccttctcttccttgactttagacgttcgtgaatgtgattgttacttgattatattgctataaatctta |
770754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 770796 - 770906
Alignment:
| Q |
90 |
ccccaaagttactctaacacaatt-ttgc-gtctttttattttgttataatttataggttggcacagtatttgtagctatcctaaggttcaattttgagt |
187 |
Q |
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||||||||||| |||||||||| | ||| |||||||||| |||| |||||||||||| ||| ||| | |||||||| || ||||||||||||||| || |
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| T |
770796 |
ccccaaagttagtctaacacaagtgttgttgtctttttatattgtaataatttataggctggtacaatgtttgtagccataataaggttcaattttgtgt |
770895 |
T |
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| Q |
188 |
atattttgttg |
198 |
Q |
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|| |||||||| |
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| T |
770896 |
atgttttgttg |
770906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 4351890 - 4351975
Alignment:
| Q |
90 |
ccccaaagttactctaacacaatt--ttgcgtctttttattttgttataatttataggttggcacagtatttgtagctatcctaag |
173 |
Q |
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| T |
4351890 |
ccccaaagttagtctaacacaattatttttgtctttttattttgttataagttataggttggcacaatgtttgtagctatactaag |
4351975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 51389375 - 51389299
Alignment:
| Q |
16 |
cattactttccttctctt----gactttagacgttcgtgaatgtgatttttacttga-tatattgctataaatctta |
87 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||| |
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| T |
51389375 |
cattactttccttctcttccttgactttagatgttcgtgaatgtgattgttacttgattatattgttataaatctta |
51389299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 51389180 - 51389097
Alignment:
| Q |
246 |
taggttctttgcagacaagcttttggtattttaaa-ttcaatgtgtctttaaaaa-ttgaactcttaacaaatgatatatcttt |
327 |
Q |
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||||||||||||| ||||| ||||||||||||||| | | |||| |||||||||| ||||| |||||||||| |||||||||| |
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| T |
51389180 |
taggttctttgcatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaataatatatcttt |
51389097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 8028215 - 8028140
Alignment:
| Q |
16 |
cattactttccttctctt----gactttagacgttcgtgaatgtgatttttacttga-tatattgctataaatctt |
86 |
Q |
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|||||||||||||||||| ||||||| |||||||||||| ||||| |||||||| |||||| ||||||||||| |
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| T |
8028215 |
cattactttccttctcttcattgactttatacgttcgtgaatttgattgttacttgattatatttctataaatctt |
8028140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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