View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13506_low_1 (Length: 954)
Name: NF13506_low_1
Description: NF13506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13506_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 170 - 578
Target Start/End: Original strand, 36073212 - 36073621
Alignment:
| Q |
170 |
gtttctataggtgtgcttgatcaactgcaatcaacatattgaatcttttcagtatgtcattgacacattttttatggtgaattaacacactatgttggta |
269 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36073212 |
gtttctataggtgtgcttgatcaattgcaatcaacatattgaatcttttcagtatgtcattgacacattttttatggtgaattaacacactatgttggta |
36073311 |
T |
|
| Q |
270 |
ttggtgaattctaaaccaaggaaatatctcaactttcataatttagtcatatcaaactcagagcttaactgatctttgattctttaaacttcatctaagt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36073312 |
ttggtgaattctaaaccaaggaaatatctcaattttcataatttagtcatatcaaactcagagcttaactgatctttgattctttaaacttcatctaagt |
36073411 |
T |
|
| Q |
370 |
tgtttctagttatcagtaaatcatcaacatacaagcaaattatgttaatgttgttctgatttgtgcctt-caacatagattccatgctcaactgtgcatt |
468 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36073412 |
tgtttctagttatcagtaaatcatcaacatataagcaaattatgttaatgttgttctgatttgtgccttccaacatagattccatgctcaactgtgcatt |
36073511 |
T |
|
| Q |
469 |
ttgagtagctattttgcttgagaaaatcatatgttcttatattccaggctcttggtgcttgctttaagccataccaagctttgttcagtttcggtacttt |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36073512 |
ttgagtagctattttgcttgagaaaatcatatgttcttatattccaggctcttggtgcttgctttaagccataccaagctttgttcagtttcggtacttt |
36073611 |
T |
|
| Q |
569 |
atcttcttca |
578 |
Q |
| |
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|||||||||| |
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| T |
36073612 |
atcttcttca |
36073621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 36073015 - 36073168
Alignment:
| Q |
19 |
aaaatacctcatgatcctttttattgcttgcatatatatgtgacaactttggtttttgcatgaatttactcactatttctacactgtgacgtatatcaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36073015 |
aaaatacctcatgatcctttttattgcttgcatatatatgtgacaactttggtttttgcatgaatttactcaccatttctacactgtgacgtatatcaag |
36073114 |
T |
|
| Q |
119 |
tcttgaattgcaagcatatctaagacttccaaccatttgcttataaagaatgtt |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36073115 |
tcttgaattgcaagcatatctaagacttccaaccatttgcttataaagaatgtt |
36073168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 848 - 943
Target Start/End: Original strand, 36075166 - 36075261
Alignment:
| Q |
848 |
gcatattttgggagtgaagaccaatcagggtaaggaacctgctatgatattattcgctttcccacgtaatccaaaataatctccattctttatatt |
943 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
36075166 |
gcatattttgggagtgaagaccaatcagggtaaggaacctgctatgatattattcgctttcccaagtaatccaaaataatctccattctttatatt |
36075261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 576 - 667
Target Start/End: Original strand, 36074917 - 36075004
Alignment:
| Q |
576 |
tcatccttcaacatcttgacttatgtatgaatcctagcaaccattgttatttggagcaaacagtactatcattgactcctttgatcacggtg |
667 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36074917 |
tcatccttcaacatcttgacttatg----aatcctagcaaccattgttatttggagcaaacagtactatcattgaatcctttgatcacggtg |
36075004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 736 - 796
Target Start/End: Original strand, 36075073 - 36075133
Alignment:
| Q |
736 |
gactcgtttattgccaacattatcctagatacacaattcaaaactaagcatctactttgtc |
796 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36075073 |
gactcgtttattgccaacattatcctagatacacaattcaaaactaagcatctactttgtc |
36075133 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 6e-52; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 200 - 578
Target Start/End: Original strand, 12447936 - 12448320
Alignment:
| Q |
200 |
tcaacatattgaatcttttcagtatgtcattgacacattttttatggtgaattaacacac-tatgttggtattggtgaattctaaaccaaggaaatatct |
298 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| || |||||| ||| ||||| | | |||| || |||||||||||||||||||||||| | |
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| T |
12447936 |
tcaacatattgaatctttttgatatgtcattgatgtatttcttttggtgagttaccacacctctactggtgttagtgaattctaaaccaaggaaatattt |
12448035 |
T |
|
| Q |
299 |
caactttcataatttagtcatatca-----aactcagagcttaactgatctttgattctttaaacttcatctaagttgtttctagttatcagtaaatcat |
393 |
Q |
| |
|
||| || ||| |||||||||||| || ||||||||||||||| ||||| |||||| ||||||||||||| ||||| || |||||| ||||||| |
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|
| T |
12448036 |
caatcctcctaaattagtcatatcatatcaaattcagagcttaactgacctttgtttctttcaacttcatctaagctgttttaagctatcagcaaatcat |
12448135 |
T |
|
| Q |
394 |
caacatacaagcaaattatgttaatgttgttctgatttgtgccttcaacatagattccatgctcaactgtgcattttgagtagctattttgcttgagaaa |
493 |
Q |
| |
|
||||||| | ||||| ||||| ||||||||||| ||| || |||| ||||| ||| ||||||||| |||||||| |||||||| ||||| ||||||||| |
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|
| T |
12448136 |
caacatataggcaaactatgtcaatgttgttcttattggtacctttgacataaatttcatgctcaattgtgcattctgagtagccatttttcttgagaaa |
12448235 |
T |
|
| Q |
494 |
atcatatgttcttatattccaggctcttggtgcttgctttaagccataccaagctttgttcagtttcggtactttatcttcttca |
578 |
Q |
| |
|
|||| | | ||||||||| |||| ||| ||||||||||||||| |||||||||| | || ||||||||||||||||| |
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|
| T |
12448236 |
ttcatcaactgtcatattccagattcttcgtgattgctttaagccatataaagctttgttgatcttaagtactttatcttcttca |
12448320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 33684787 - 33684732
Alignment:
| Q |
502 |
ttcttatattccaggctcttggtgcttgctttaagccataccaagctttgttcagt |
557 |
Q |
| |
|
||||| |||| ||||||||||||||||| |||||||||||| ||| |||||||||| |
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|
| T |
33684787 |
ttcttttatttcaggctcttggtgcttgttttaagccatacaaagttttgttcagt |
33684732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 33701841 - 33701786
Alignment:
| Q |
502 |
ttcttatattccaggctcttggtgcttgctttaagccataccaagctttgttcagt |
557 |
Q |
| |
|
||||| |||| ||||||||||||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
33701841 |
ttcttttatttcaggctcttggtgcttgttttaagccatacaaagttttgttcagt |
33701786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 12447793 - 12447850
Alignment:
| Q |
103 |
tgtgacgtatatcaagtcttgaattgcaagcatatctaagacttccaaccatttgctt |
160 |
Q |
| |
|
|||||| || |||| || |||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
12447793 |
tgtgacataaatcaggtattgaattgcaaggatatctgagacttccaaccatttgctt |
12447850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 12696452 - 12696598
Alignment:
| Q |
22 |
atacctcatgatcctttttattgcttgcatatatatgtgacaactttggtttttgcatgaatttactcactatttctacactgtgacgtatatcaagtct |
121 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||||||| |||| |||||||||||||| | ||||| | | ||||| || ||| ||||||| |||| |
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|
| T |
12696452 |
atacctcatgatcctttttacttcttg----aatatgtgacagcttttgtttttgcatgaatcttctcaccactcctacaatgcgacatatatcaggtct |
12696547 |
T |
|
| Q |
122 |
tgaattgcaagcatatctaagacttccaaccatttgcttataaagaatgtt |
172 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||| || |||||| |||| |
|
|
| T |
12696548 |
tgaatttcaagcatatatgagacttccaaccatttgtttgtaaagagtgtt |
12696598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 387 - 537
Target Start/End: Complemental strand, 6362966 - 6362818
Alignment:
| Q |
387 |
aaatcatcaacatacaagcaaattatgttaatgttgttctgatttgtgccttcaacatagattccatgctcaactgtgcattttgagtagctattttgct |
486 |
Q |
| |
|
||||||| ||| || ||||||| |||||| | ||||||||||| | |||| |||||||||||||||||||||||||||| |||||||| ||||| || |
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|
| T |
6362966 |
aaatcattaacttataagcaaactatgttgacattgttctgattggcacctttgacatagattccatgctcaactgtgcattatgagtagccattttcct |
6362867 |
T |
|
| Q |
487 |
tgagaaaatcatatgttcttatattccaggctcttggtgcttgctttaagc |
537 |
Q |
| |
|
||||||| |||| |||| ||| |||||||||||||||||||||||| |
|
|
| T |
6362866 |
tgagaaactcatcaattct--aattataggctcttggtgcttgctttaagc |
6362818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 557
Target Start/End: Complemental strand, 25546759 - 25546699
Alignment:
| Q |
497 |
atatgttcttatattccaggctcttggtgcttgctttaagccataccaagctttgttcagt |
557 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||||| |||||| |||||||||||||| |
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|
| T |
25546759 |
atatattcttctattccaggctctaggtgcttgctttaggccatagaaagctttgttcagt |
25546699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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