View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13506_low_11 (Length: 304)
Name: NF13506_low_11
Description: NF13506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13506_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 15874091 - 15874375
Alignment:
| Q |
13 |
aacaatatagcatctctccatatgtacataagtcggtcaaacttaagatttagggcatccgggttgtggtcatcaacatttgccataaagtgtagcaaag |
112 |
Q |
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||||||| || |||||||||||||| ||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||||| |
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| T |
15874091 |
aacaataaagtatctctccatatgtgcatcagttggtcaaacttaaggtttagggcattcgggcattggtcatcaacatttcccataaagtgtagcaaag |
15874190 |
T |
|
| Q |
113 |
aaaatccatccacaaacaatttccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttc |
212 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15874191 |
aacatccatccacaaacaatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttc |
15874290 |
T |
|
| Q |
213 |
aatcattttaagcaaaagcttacatgcttcgttatcatctttatcaattgttttgccataattagcaacaaatatgatgatgtccat |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
15874291 |
aatctttttaagcaaaagcttacatgcttcgttatcatctttatcaatttttttggcataattagcaacaaatat--tgatgtccat |
15874375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 299
Target Start/End: Complemental strand, 15899967 - 15899694
Alignment:
| Q |
24 |
atctctccatatgtacataagtcggtcaaacttaagatttagggcatccgggttgtggtcatcaacatttgccataaagtgtagcaaagaaaatccatcc |
123 |
Q |
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| T |
15899967 |
atctctccatatgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatcc |
15899868 |
T |
|
| Q |
124 |
acaaacaatttccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttcaatcattttaa |
223 |
Q |
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| T |
15899867 |
acaaacaatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaaatcttcaatattatcttcaatctttttaa |
15899768 |
T |
|
| Q |
224 |
gcaaaagcttacatgcttcgttatcatctttatcaattgttttgccataattagcaacaaatatgatgatgtccat |
299 |
Q |
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|||||||| |||||||||||||| |||||||||||||| |||||||||||| |||||||||||| |||||||||| |
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| T |
15899767 |
gcaaaagcatacatgcttcgttagcatctttatcaatttttttgccataatcagcaacaaatat--tgatgtccat |
15899694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 299
Target Start/End: Complemental strand, 15920995 - 15920722
Alignment:
| Q |
24 |
atctctccatatgtacataagtcggtcaaacttaagatttagggcatccgggttgtggtcatcaacatttgccataaagtgtagcaaagaaaatccatcc |
123 |
Q |
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|||||||||||||| ||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
15920995 |
atctctccatatgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatcc |
15920896 |
T |
|
| Q |
124 |
acaaacaatttccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttcaatcattttaa |
223 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
15920895 |
acaaacaatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaaatattcaatattatcttcaatctttttaa |
15920796 |
T |
|
| Q |
224 |
gcaaaagcttacatgcttcgttatcatctttatcaattgttttgccataattagcaacaaatatgatgatgtccat |
299 |
Q |
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| T |
15920795 |
gcaaaagcatacatgcttcgttaacatctttatcaatttttttgccataataagcaacaaatat--tgatgtccat |
15920722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 14060516 - 14060746
Alignment:
| Q |
23 |
catctctccatatgtacataagtcggtcaaacttaagatttagggcatccgggttgtggtcatcaacatttgccataaagtgtagcaaagaaaatccatc |
122 |
Q |
| |
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||||||||||||| ||||| | | ||||||||||||||||||| | || || | |||||||| |||||| |||| || |||||||| ||| ||||||| |
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| T |
14060516 |
catctctccatatatacatcaattggtcaaacttaagatttagcccttcgggatattggtcatcgacatttcccatgaaatgtagcaaggaacatccatc |
14060615 |
T |
|
| Q |
123 |
cacaaacaatttccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttcaatcatttta |
222 |
Q |
| |
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||| |||||| |||||||||||||||| |||||| | |||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||| | ||| |
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| T |
14060616 |
cacgaacaatatccaagcaagatcattgtcattgaatccttcaattgcatcttcagtgaacatgttcttcaattcttcaatattatcttcaatcttgtta |
14060715 |
T |
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| Q |
223 |
agcaaaagcttacatgcttcgttatcatctt |
253 |
Q |
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|||||||| || ||||||| |||| |||||| |
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| T |
14060716 |
agcaaaagtttgcatgcttggttaccatctt |
14060746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 14049145 - 14049352
Alignment:
| Q |
23 |
catctctccatatgtacataagtcggtcaaacttaagatttagggcatccgggttgtggtcatcaacatttgccataaagtgtagcaaagaaaatccatc |
122 |
Q |
| |
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||||||||||||||||||| | | | ||||||||||||||||| | || || | |||||||| |||||| ||||||| || ||||| ||| ||||||| |
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| T |
14049145 |
catctctccatatgtacatcaattgatcaaacttaagatttagcccttcaggatattggtcatcgacattttccataaaatgcagcaaggaacatccatc |
14049244 |
T |
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| Q |
123 |
cacaaacaatttccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttcaatcatttta |
222 |
Q |
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||| |||||| ||||||||||||| || |||||| | |||||||||||||| || |||||||| ||||||| | | ||||||||||||||||| | ||| |
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| T |
14049245 |
cacgaacaatatccaagcaagatcgttgtcattgaatccttcaattgcatcttccgtgaacatgttcttcaattctacaatattatcttcaatcttgtta |
14049344 |
T |
|
| Q |
223 |
agcaaaag |
230 |
Q |
| |
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|||||||| |
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| T |
14049345 |
agcaaaag |
14049352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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