View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13506_low_2 (Length: 703)
Name: NF13506_low_2
Description: NF13506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13506_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 18 - 678
Target Start/End: Complemental strand, 43868323 - 43867669
Alignment:
| Q |
18 |
aaactcacagaaactatccaagtcacacatttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggttggcatcgaaaact |
117 |
Q |
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| T |
43868323 |
aaactcacagaaactatccaagtcacacatttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggttggcatcgaaaact |
43868224 |
T |
|
| Q |
118 |
ggcacacgacacagcaactgctcctcatcagcctcgtcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868223 |
ggcacacgacacagcaactgctcctcatcagcctcatcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaa |
43868124 |
T |
|
| Q |
218 |
gaaaactagtattgaagagaactttttccttgagacgttgttgttgttgttgaatcgacgaatttttgttgtggcggggagttcttgctttccttgtgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868123 |
gaaaactagtattgaagagaactttttccttgagacgttgctgttgttgttgaatcgacgaatttttgttgtggcggggagttcttgctttccttgtgaa |
43868024 |
T |
|
| Q |
318 |
tccactgtgccatgcttgtgctgttgttgttaccttagcagatgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaacc |
417 |
Q |
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| T |
43868023 |
tccactgtgccatgcttgtgctgttgttgttaccttagcagacgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaacc |
43867924 |
T |
|
| Q |
418 |
aaattgtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctc |
517 |
Q |
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| T |
43867923 |
aaattgtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctc |
43867824 |
T |
|
| Q |
518 |
ccaaggcacctgcatctgcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtcnnnnnnnnnnnnntgattcaattaat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43867823 |
ccaaggcacctgcatctgcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtc------aaaaaaatgattcaattaat |
43867730 |
T |
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| Q |
618 |
ggtttgtgtttgttgaaactagacaatgtgatgaaggagacacactagtgtcagtaggtac |
678 |
Q |
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| T |
43867729 |
ggtttgtgtttgttgaaactagacaatgtgatgaaggagacacactagtgtcagtaggtac |
43867669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 476
Target Start/End: Original strand, 50056084 - 50056137
Alignment:
| Q |
423 |
gtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctct |
476 |
Q |
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||||||| | ||||| || ||||||||||| ||||||||| ||||||||||||| |
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| T |
50056084 |
gtcacaagcttgacagagaaaagcatcatcagcagcacaataccaacgtgctct |
50056137 |
T |
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