View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13506_low_3 (Length: 653)

Name: NF13506_low_3
Description: NF13506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13506_low_3
NF13506_low_3
[»] chr3 (9 HSPs)
chr3 (21-653)||(38975521-38976143)
chr3 (490-540)||(2519583-2519633)
chr3 (329-492)||(40880871-40881026)
chr3 (434-494)||(14548741-14548801)
chr3 (434-492)||(43115048-43115106)
chr3 (425-490)||(30322031-30322096)
chr3 (485-525)||(9279460-9279500)
chr3 (439-491)||(42733962-42734014)
chr3 (486-542)||(52324012-52324068)
[»] chr8 (18 HSPs)
chr8 (175-289)||(34297234-34297348)
chr8 (486-540)||(31875694-31875748)
chr8 (484-541)||(6950216-6950273)
chr8 (490-543)||(7008507-7008560)
chr8 (425-494)||(11183535-11183604)
chr8 (486-545)||(39392796-39392855)
chr8 (508-542)||(9380012-9380046)
chr8 (486-540)||(11415035-11415089)
chr8 (425-491)||(31862486-31862552)
chr8 (486-540)||(35869718-35869772)
chr8 (486-538)||(2107461-2107513)
chr8 (434-494)||(7645968-7646028)
chr8 (490-538)||(8062123-8062171)
chr8 (425-477)||(8535781-8535833)
chr8 (486-538)||(12972739-12972791)
chr8 (488-540)||(26499594-26499646)
chr8 (441-489)||(30627929-30627977)
chr8 (490-538)||(31884477-31884525)
[»] chr5 (15 HSPs)
chr5 (486-539)||(26516180-26516233)
chr5 (486-540)||(6725118-6725172)
chr5 (425-494)||(37588371-37588440)
chr5 (429-494)||(42181107-42181172)
chr5 (474-534)||(38028499-38028559)
chr5 (496-540)||(39823267-39823311)
chr5 (490-545)||(11456999-11457054)
chr5 (490-541)||(32172533-32172584)
chr5 (486-540)||(3951499-3951552)
chr5 (440-494)||(15003540-15003594)
chr5 (486-540)||(20982270-20982324)
chr5 (434-487)||(33533559-33533612)
chr5 (502-543)||(39257537-39257578)
chr5 (331-395)||(4855776-4855840)
chr5 (488-540)||(13782003-13782055)
[»] chr1 (20 HSPs)
chr1 (420-494)||(33976676-33976750)
chr1 (439-494)||(37241847-37241902)
chr1 (486-545)||(48133074-48133133)
chr1 (434-494)||(6659504-6659564)
chr1 (434-494)||(7218094-7218154)
chr1 (434-494)||(23902087-23902147)
chr1 (434-494)||(25479571-25479631)
chr1 (486-545)||(17631229-17631288)
chr1 (508-542)||(4768974-4769008)
chr1 (489-546)||(2035489-2035546)
chr1 (484-533)||(3224311-3224360)
chr1 (439-484)||(5924055-5924100)
chr1 (501-538)||(15514933-15514970)
chr1 (321-418)||(34536216-34536313)
chr1 (336-420)||(6279455-6279539)
chr1 (486-538)||(23895219-23895271)
chr1 (425-493)||(30257674-30257742)
chr1 (488-540)||(32720572-32720624)
chr1 (434-494)||(39347987-39348047)
chr1 (486-538)||(52542447-52542499)
[»] chr7 (9 HSPs)
chr7 (491-540)||(31341075-31341124)
chr7 (425-491)||(2825242-2825308)
chr7 (440-494)||(20553093-20553147)
chr7 (329-419)||(30751576-30751666)
chr7 (434-491)||(3610760-3610817)
chr7 (441-494)||(24895346-24895399)
chr7 (439-494)||(38010704-38010759)
chr7 (439-492)||(15075110-15075163)
chr7 (486-539)||(22388039-22388092)
[»] chr4 (18 HSPs)
chr4 (425-494)||(53315316-53315385)
chr4 (329-420)||(55870265-55870356)
chr4 (424-494)||(30207581-30207651)
chr4 (434-494)||(11264291-11264351)
chr4 (434-494)||(24929483-24929543)
chr4 (434-494)||(49219129-49219189)
chr4 (486-541)||(24193465-24193520)
chr4 (490-540)||(485962-486012)
chr4 (425-491)||(6466057-6466123)
chr4 (487-537)||(22684652-22684702)
chr4 (486-540)||(24443919-24443973)
chr4 (331-420)||(2996629-2996718)
chr4 (478-543)||(11802406-11802471)
chr4 (486-547)||(33640982-33641043)
chr4 (425-494)||(36048523-36048592)
chr4 (439-492)||(42866060-42866113)
chr4 (442-494)||(18630670-18630722)
chr4 (434-494)||(45128330-45128390)
[»] chr6 (19 HSPs)
chr6 (470-536)||(24828734-24828800)
chr6 (487-540)||(3155057-3155110)
chr6 (486-547)||(32975852-32975913)
chr6 (329-372)||(738464-738507)
chr6 (439-494)||(2117393-2117448)
chr6 (490-537)||(6078428-6078475)
chr6 (486-540)||(14340938-14340992)
chr6 (486-540)||(21919955-21920009)
chr6 (488-541)||(2785805-2785858)
chr6 (336-385)||(33738072-33738121)
chr6 (434-494)||(281868-281928)
chr6 (434-494)||(1275139-1275199)
chr6 (508-540)||(3204699-3204731)
chr6 (486-538)||(4247219-4247271)
chr6 (425-493)||(7148657-7148725)
chr6 (434-494)||(8035168-8035228)
chr6 (434-494)||(31671094-31671154)
chr6 (318-410)||(32171295-32171387)
chr6 (339-419)||(34939801-34939881)
[»] chr2 (10 HSPs)
chr2 (425-494)||(10285850-10285919)
chr2 (440-492)||(757447-757499)
chr2 (439-494)||(22681210-22681265)
chr2 (439-494)||(30552669-30552724)
chr2 (492-542)||(5942804-5942854)
chr2 (486-544)||(32634221-32634279)
chr2 (425-494)||(11513888-11513957)
chr2 (434-487)||(16867736-16867789)
chr2 (425-494)||(39983332-39983401)
chr2 (494-542)||(14316962-14317010)
[»] scaffold0085 (1 HSPs)
scaffold0085 (486-547)||(26176-26237)


Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 21 - 653
Target Start/End: Original strand, 38975521 - 38976143
Alignment:
Q  21 aaaagttgtacttgcagccgttatattggcatctcttcagcggcttcatggtagtttcgacgacacgatggagacttgtgaagaagggaacgcaagttta 120  Q
    |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38975521 aaaaattggacttgcagccgttatattgccatctcttcagcggcttcatggtagtttcgacgacacgatggagacttgtgaagaagggaacacaagttta 38975620  T
Q  121 gaaggttcaagtcgtggcaataaagtaatcgaatttgaaggagatgggaaattgaccaatgttgatttgcaaagagaagatgagtgtgggatttgcttag 220  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38975621 gaaggttcaagttgtggcaataaagtaatcgaatttgaaggagatgggaaattaaccaatgttgatttgcaaagagaagatgagtgtgggatttgcttag 38975720  T
Q  221 agccttgtaccaaaatggttttgcctaattgctgccacgccatgtgcatcaaatgctaccgcaagtggtaattaatcacatttgtctctatcttatatta 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38975721 agccttgtaccaaaatggttttgcctaattgctgccacgccatgtgcatcaaatgctaccgcaagtggtaattaatcacatttgtctctatcttatatta 38975820  T
Q  321 ggcttgtgtggattaacttatttcagcttatttattgaaataaacatttgtgtgactgtttgagacagcttataggaacagtttatgacatatccataag 420  Q
    ||||||||||||||||          ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38975821 ggcttgtgtggattaa----------cttatttattgaaataaacatttgtgtgactgtttgagagagcttataggaacagtttatgacatatccataag 38975910  T
Q  421 accgtaagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatgataagcgcttatggtataagcgcttga 520  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  38975911 accataagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatgataagcgcttataccataagcgcttga 38976010  T
Q  521 ttaagttatttatccaaacaaggtcattgtcaacttgcatagatgctttattagtttatcagtcttacaatctttcttctgctggacctacttgatttgc 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  38976011 ttaagttatttatccaaacaaggtcattgtcaacttgcatagatgctttattagtttatcagtctgacaatctttcttctgctggacctatttgatttgc 38976110  T
Q  621 aggaacagaaagtcagagtcgtgtcctttttgt 653  Q
    |||||||||||||||||||||||||||||||||    
T  38976111 aggaacagaaagtcagagtcgtgtcctttttgt 38976143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 540
Target Start/End: Complemental strand, 2519633 - 2519583
Alignment:
Q  490 tatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    |||||||||| |||||| ||||| |||||||||||||| ||||||||||||    
T  2519633 tatgataagcacttatgttataaacgcttgattaagttgtttatccaaaca 2519583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 492
Target Start/End: Original strand, 40880871 - 40881026
Alignment:
Q  329 tggattaacttatttcagcttatttattgaaataaacatttgtgtgactgtttgagacagcttataggaacagtttatgacatatccataagaccgtaag 428  Q
    |||||| |||||||| ||||||| ||||||||| |||||  ||| |||||||||||| |||||||   ||||  |||||||||        |||||||||    
T  40880871 tggattgacttatttaagcttatctattgaaatgaacatacgtgagactgtttgagagagcttatgaaaacaacttatgacat--------gaccgtaag 40880962  T
Q  429 ctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatat 492  Q
     | | || |||||||||  ||||  |||||||| || ||| ||||||||| |||||||||||||    
T  40880963 ttgttttaaacttatttttataacttctctaggatagtttatgaaaacaatttatagcttatat 40881026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 14548741 - 14548801
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| ||||||||||||||||||| ||  ||  || |||||||||||||||||||||||||    
T  14548741 ttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatga 14548801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 492
Target Start/End: Complemental strand, 43115106 - 43115048
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatat 492  Q
    |||| ||||||||||||||||||| | | || ||  |||||||||||||||||||||||    
T  43115106 ttcagcttatttccataagctctcaatgatagttcatgaaaacaacttatagcttatat 43115048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 30322031 - 30322096
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttat 490  Q
    |||||| | ||||| ||||||||||||||||| |||| ||  || ||||||||||||| |||||||    
T  30322031 taagctgtgttcaatttatttccataagctctttaggataacttatgaaaacaacttacagcttat 30322096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 525
Target Start/End: Original strand, 9279460 - 9279500
Alignment:
Q  485 gcttatatgataagcgcttatggtataagcgcttgattaag 525  Q
    |||||||||||||||||||||| |||||||| || ||||||    
T  9279460 gcttatatgataagcgcttatgctataagcgattcattaag 9279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 42733962 - 42734014
Alignment:
Q  439 cttatttccataagctctctaggttattttgtgaaaacaacttatagcttata 491  Q
    ||||||||||||||||||| | | ||  | |||||||||||||||||||||||    
T  42733962 cttatttccataagctctccacgatagctggtgaaaacaacttatagcttata 42734014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 542
Target Start/End: Original strand, 52324012 - 52324068
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaag 542  Q
    |||||||| ||| | |||||| ||||||| ||| |||||||||||||| ||||||||    
T  52324012 cttatatgctaaacacttatgctataagcacttaattaagttatttatacaaacaag 52324068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 34297348 - 34297234
Alignment:
Q  175 accaatgttgatttgcaaagagaagatgagtgtgggatttgcttagagccttgtaccaaaatggttttgcctaattgctgccacgccatgtgcatcaaat 274  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||||| || || ||||||||||||||||||||||||||||| || ||||| |||||||    
T  34297348 accaatgttgatttggaaagagaagatgaatgtgggatatgcttagaaccatgcaccaaaatggttttgcctaattgctgccatgctatgtgtatcaaat 34297249  T
Q  275 gctaccgcaagtggt 289  Q
    |||||||||||||||    
T  34297248 gctaccgcaagtggt 34297234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 540
Target Start/End: Original strand, 31875694 - 31875748
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||||||||||||| ||||| ||||| |||||||| | ||||||||||    
T  31875694 cttatatgataagcgcttatgctataaacgcttcattaagttgtctatccaaaca 31875748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 6950273 - 6950216
Alignment:
Q  484 agcttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaa 541  Q
    ||||||||||||||||| ||||| ||||||| ||| |||||||| |||||| ||||||    
T  6950273 agcttatatgataagcgtttatgctataagcacttaattaagttgtttatctaaacaa 6950216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 543
Target Start/End: Complemental strand, 7008560 - 7008507
Alignment:
Q  490 tatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaagg 543  Q
    |||||||| |||||||| ||||||||||| |||||||| |||||||||| ||||    
T  7008560 tatgataaacgcttatgctataagcgcttaattaagttgtttatccaaaaaagg 7008507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 494
Target Start/End: Complemental strand, 11183604 - 11183535
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||| | |||| ||||||||||||||||||| ||| ||  ||||||||||| ||||||||| ||||||    
T  11183604 taagctgttttcagcttatttccataagctctccagggtagcttgtgaaaacagcttatagctaatatga 11183535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 545
Target Start/End: Original strand, 39392796 - 39392855
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaaggtc 545  Q
    |||||||||||||| |||||| |||||  |||| ||||||||||||||  ||||||||||    
T  39392796 cttatatgataagcacttatgctataaatgcttaattaagttatttatggaaacaaggtc 39392855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 542
Target Start/End: Complemental strand, 9380046 - 9380012
Alignment:
Q  508 tataagcgcttgattaagttatttatccaaacaag 542  Q
    ||||||||||| |||||||||||||||||||||||    
T  9380046 tataagcgcttaattaagttatttatccaaacaag 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 540
Target Start/End: Complemental strand, 11415089 - 11415035
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||||| | ||||| ||||||||||||| ||||||  |||||||||||    
T  11415089 cttatatgataagtgattatgctataagcgcttgaataagttggttatccaaaca 11415035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 491
Target Start/End: Complemental strand, 31862552 - 31862486
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttata 491  Q
    |||||| | |||| ||||||| ||||||||||||||| ||  || |||||||| |||||||||||||    
T  31862552 taagctgttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagcttata 31862486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 540
Target Start/End: Complemental strand, 35869772 - 35869718
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||||| ||||||| ||||||||||| || ||||| | ||||||||||    
T  35869772 cttatatgataagtgcttatgctataagcgcttaataaagttgtgtatccaaaca 35869718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 538
Target Start/End: Original strand, 2107461 - 2107513
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaa 538  Q
    |||||||||||||||| || | ||||| ||||| |||||||| ||||||||||    
T  2107461 cttatatgataagcgcataagctataaacgcttaattaagttgtttatccaaa 2107513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 7646028 - 7645968
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| |||||||||||||||| |  ||||||  || |||||||||||||||||||| ||||    
T  7646028 ttcagcttatttccataagctttacaggttagcttatgaaaacaacttatagcttacatga 7645968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 490 - 538
Target Start/End: Complemental strand, 8062171 - 8062123
Alignment:
Q  490 tatgataagcgcttatggtataagcgcttgattaagttatttatccaaa 538  Q
    |||||||| ||||||| |||||||||||| ||||||||  |||||||||    
T  8062171 tatgataaacgcttatagtataagcgcttaattaagttgcttatccaaa 8062123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 477
Target Start/End: Original strand, 8535781 - 8535833
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaaca 477  Q
    |||||||| || | ||||||||||||||||||||||| || ||| ||||||||    
T  8535781 taagctattttaagcttatttccataagctctctaggataatttatgaaaaca 8535833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 538
Target Start/End: Complemental strand, 12972791 - 12972739
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaa 538  Q
    ||||||||||||  ||||||| ||||||||||| |||||||| ||| ||||||    
T  12972791 cttatatgataaatgcttatgctataagcgcttaattaagttgtttgtccaaa 12972739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 540
Target Start/End: Complemental strand, 26499646 - 26499594
Alignment:
Q  488 tatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||||||||||| | ||||| ||| |||||||| ||||| ||||||    
T  26499646 tatatgataagcgcttatgttttaagcacttaattaagttgtttattcaaaca 26499594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 441 - 489
Target Start/End: Original strand, 30627929 - 30627977
Alignment:
Q  441 tatttccataagctctctaggttattttgtgaaaacaacttatagctta 489  Q
    ||||||||||||||||||| | ||  || ||||||||||||||||||||    
T  30627929 tatttccataagctctctaagataacttatgaaaacaacttatagctta 30627977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 490 - 538
Target Start/End: Complemental strand, 31884525 - 31884477
Alignment:
Q  490 tatgataagcgcttatggtataagcgcttgattaagttatttatccaaa 538  Q
    ||||||||||||||||| |||||| |||| ||| |||| ||||||||||    
T  31884525 tatgataagcgcttatgctataagtgcttaattgagttgtttatccaaa 31884477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 486 - 539
Target Start/End: Complemental strand, 26516233 - 26516180
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaac 539  Q
    ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  26516233 cttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaac 26516180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 540
Target Start/End: Complemental strand, 6725172 - 6725118
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    |||||||||||||| |||||| ||||||| ||| ||||| |||||||||||||||    
T  6725172 cttatatgataagcacttatgctataagcacttaattaaattatttatccaaaca 6725118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 494
Target Start/End: Original strand, 37588371 - 37588440
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||| | |||| ||||||||||||||||||| ||  ||  || |||||||||||||||||||||||||    
T  37588371 taagctgttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatga 37588440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 494
Target Start/End: Original strand, 42181107 - 42181172
Alignment:
Q  429 ctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| |||| ||||||||| | ||||||||||| ||  ||||| ||||||||||||||||||||||    
T  42181107 ctattttcagcttatttccttgagctctctaggataacttgtgcaaacaacttatagcttatatga 42181172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 534
Target Start/End: Complemental strand, 38028559 - 38028499
Alignment:
Q  474 aacaacttatagcttatatgataagcgcttatggtataagcgcttgattaagttatttatc 534  Q
    ||||||||||| || |||||||||||||||||| ||||| ||||  | |||||||||||||    
T  38028559 aacaacttataactcatatgataagcgcttatgctataaacgctcaagtaagttatttatc 38028499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 39823267 - 39823311
Alignment:
Q  496 aagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||    
T  39823267 aagcgcttatgctgtaagcgcttgattaagttgtttatccaaaca 39823311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 545
Target Start/End: Complemental strand, 11457054 - 11456999
Alignment:
Q  490 tatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaaggtc 545  Q
    |||||||||| |||||| |||||||||||||||||| | |||||||| ||| ||||    
T  11457054 tatgataagcacttatgctataagcgcttgattaagctgtttatccagacagggtc 11456999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 541
Target Start/End: Complemental strand, 32172584 - 32172533
Alignment:
Q  490 tatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaa 541  Q
    ||||||||||||||||| | ||||||||| |||| ||| |||||||||||||    
T  32172584 tatgataagcgcttatgctgtaagcgcttaattatgttgtttatccaaacaa 32172533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 540
Target Start/End: Complemental strand, 3951552 - 3951499
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||||||  ||||| ||||| ||||| |||||||||||||||||||||    
T  3951552 cttatatgataagcatttatgctataa-cgcttaattaagttatttatccaaaca 3951499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 494
Target Start/End: Original strand, 15003540 - 15003594
Alignment:
Q  440 ttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    ||||||||||||||||||| || ||  || ||||||| |||||||||||||||||    
T  15003540 ttatttccataagctctcttggatagcttatgaaaaccacttatagcttatatga 15003594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 540
Target Start/End: Original strand, 20982270 - 20982324
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    |||||||||||||| |||||| ||||||| ||| || ||||| ||||||||||||    
T  20982270 cttatatgataagcacttatgctataagcacttaatgaagttgtttatccaaaca 20982324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 487
Target Start/End: Original strand, 33533559 - 33533612
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagct 487  Q
    |||||||||||||||||||||||| | | ||  ||||||||||| |||||||||    
T  33533559 ttcaacttatttccataagctctccaagatagcttgtgaaaacaccttatagct 33533612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 543
Target Start/End: Original strand, 39257537 - 39257578
Alignment:
Q  502 ttatggtataagcgcttgattaagttatttatccaaacaagg 543  Q
    ||||| ||||||||||| |||||||| |||||||||||||||    
T  39257537 ttatgctataagcgcttaattaagttgtttatccaaacaagg 39257578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 4855840 - 4855776
Alignment:
Q  331 gattaacttatttcagcttatttattgaaataaacatttgtgtgactgtttgagacagcttatag 395  Q
    |||| |||||||| ||||||| || |||  |||||| ||||| |||||||||||| |||||||||    
T  4855840 gattgacttatttgagcttatataatgacttaaacacttgtgagactgtttgagagagcttatag 4855776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 540
Target Start/End: Original strand, 13782003 - 13782055
Alignment:
Q  488 tatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||| |||||||  |||||||||| |||||||| |||||| |||||    
T  13782003 tatatgataagtgcttatgccataagcgcttaattaagttgtttatctaaaca 13782055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 420 - 494
Target Start/End: Complemental strand, 33976750 - 33976676
Alignment:
Q  420 gaccgtaagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| |||||| | |||||||||||||||||||||||||||| ||  ||  |||||||||||||| |||||||||    
T  33976750 gaccttaagcttttttcaacttatttccataagctctctaggataggttaagaaaacaacttataacttatatga 33976676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 37241847 - 37241902
Alignment:
Q  439 cttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    ||||||| ||||||||||||||| ||| || |||||||||||| ||||||||||||    
T  37241847 cttattttcataagctctctaggatatcttatgaaaacaacttctagcttatatga 37241902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 545
Target Start/End: Original strand, 48133074 - 48133133
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaaggtc 545  Q
    ||||||||||||||| ||||| ||||||||||| |||||||| | |||||||||| ||||    
T  48133074 cttatatgataagcgtttatgctataagcgcttaattaagttgtctatccaaacagggtc 48133133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 6659564 - 6659504
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| |||||||| ||||||||||| |||||  || |||||||| ||||||||||||||||    
T  6659564 ttcagcttatttcgataagctctcttggttagcttatgaaaacatcttatagcttatatga 6659504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 7218094 - 7218154
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||||||||| |||||| |||| ||| ||  || |||||||||||||||||||||||||    
T  7218094 ttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatga 7218154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 23902087 - 23902147
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| |||| |||||||||||||||| | ||  || |||||||||||||||||||||||||    
T  23902087 ttcagcttacttccataagctctctaagatagcttttgaaaacaacttatagcttatatga 23902147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 25479631 - 25479571
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| ||||||| ||||||||||||||| ||  || ||||||||||||||||| |||||||    
T  25479631 ttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagcctatatga 25479571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 545
Target Start/End: Original strand, 17631229 - 17631288
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaaggtc 545  Q
    |||||||||||||| ||||| |||| || |||| |||||| |||||||||||||| ||||    
T  17631229 cttatatgataagcacttatagtattagtgcttaattaagctatttatccaaacatggtc 17631288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 542
Target Start/End: Original strand, 4768974 - 4769008
Alignment:
Q  508 tataagcgcttgattaagttatttatccaaacaag 542  Q
    ||||||||||| |||||||||||||||||||||||    
T  4768974 tataagcgcttaattaagttatttatccaaacaag 4769008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 2035489 - 2035546
Alignment:
Q  489 atatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaaggtca 546  Q
    |||| ||||| ||||||  |||||| |||| |||||||||||||||||||||| ||||    
T  2035489 atataataagggcttatactataagtgcttaattaagttatttatccaaacaatgtca 2035546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 533
Target Start/End: Complemental strand, 3224360 - 3224311
Alignment:
Q  484 agcttatatgataagcgcttatggtataagcgcttgattaagttatttat 533  Q
    ||||||||||||||  ||||||| ||||||| |||||||||||| |||||    
T  3224360 agcttatatgataaatgcttatgttataagcacttgattaagttgtttat 3224311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 5924100 - 5924055
Alignment:
Q  439 cttatttccataagctctctaggttattttgtgaaaacaacttata 484  Q
    ||||||||||||||||||||||| ||  || |||||||||||||||    
T  5924100 cttatttccataagctctctaggataacttatgaaaacaacttata 5924055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 538
Target Start/End: Complemental strand, 15514970 - 15514933
Alignment:
Q  501 cttatggtataagcgcttgattaagttatttatccaaa 538  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  15514970 cttatggtataagcgcttaattaagttgtttatccaaa 15514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 418
Target Start/End: Complemental strand, 34536313 - 34536216
Alignment:
Q  321 ggcttgtgtggattaacttatttcagcttatttattgaaataaacatttgtgtgactgtttgagacagcttataggaacagtttatgacatatccata 418  Q
    ||||||| |||| | |||||||| | | ||| |||||| ||||||| ||||| ||||||||||||  ||||||   ||||| ||||||||| ||||||    
T  34536313 ggcttgtttggaatgacttatttgaacgtatctattgacataaacacttgtgagactgtttgagatggcttatgaaaacagcttatgacatgtccata 34536216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 420
Target Start/End: Complemental strand, 6279539 - 6279455
Alignment:
Q  336 acttatttcagcttatttattgaaataaacatttgtgtgactgtttgagacagcttataggaacagtttatgacatatccataag 420  Q
    |||||||||||||||  || ||| |||| || ||||||| |||||||||| ||||||| | ||||||| |  |||| ||||||||    
T  6279539 acttatttcagcttaactactgacataagcacttgtgtggctgtttgagagagcttatggaaacagttaaccacatgtccataag 6279455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 538
Target Start/End: Complemental strand, 23895271 - 23895219
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaa 538  Q
    ||||||||||||| ||||||| | |||| |||| ||||||||||| |||||||    
T  23895271 cttatatgataagggcttatgctttaagtgcttaattaagttattcatccaaa 23895219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 493
Target Start/End: Complemental strand, 30257742 - 30257674
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatg 493  Q
    |||||| | |||| |||||||| |||||| ||| ||| || ||| ||||||||||||| ||||||||||    
T  30257742 taagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaacttaaagcttatatg 30257674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 540
Target Start/End: Original strand, 32720572 - 32720624
Alignment:
Q  488 tatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||| ||||||  || ||| ||||||||||| ||||||||||||||    
T  32720572 tatatgataagagcttatactacaagtgcttgattaagctatttatccaaaca 32720624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 39347987 - 39348047
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| |||||||||||||||| |  ||| || ||| ||||||||||||||||||| |||||    
T  39347987 ttcagcttatttccataagctttgcaggatagtttatgaaaacaacttatagcttgtatga 39348047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 538
Target Start/End: Complemental strand, 52542499 - 52542447
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaa 538  Q
    ||||||||||| | ||||||| ||| ||||||| |||||||| ||||||||||    
T  52542499 cttatatgatacgtgcttatgctatcagcgcttaattaagttgtttatccaaa 52542447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 540
Target Start/End: Complemental strand, 31341124 - 31341075
Alignment:
Q  491 atgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||||    
T  31341124 atgataagcgcttatgcaataagcgcttgattaagttgtttatccaaaca 31341075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 2825242 - 2825308
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttata 491  Q
    |||| ||| |||| |||||||||||||| |||||||| ||  ||||||||||||||||||| |||||    
T  2825242 taagttattttcagcttatttccataagttctctaggatagcttgtgaaaacaacttatagtttata 2825308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 494
Target Start/End: Complemental strand, 20553147 - 20553093
Alignment:
Q  440 ttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||||||||||||| ||||| ||  |||||||||||||||||||||| |||||    
T  20553147 ttatttccataagctcactaggataacttgtgaaaacaacttatagcttgtatga 20553093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 419
Target Start/End: Complemental strand, 30751666 - 30751576
Alignment:
Q  329 tggattaacttatttcagcttatttattgaaataaacatttgtgtgactgtttgagacagcttataggaacagtttatgacatatccataa 419  Q
    ||||||||||||||| | ||||| || ||| |||| || ||||| ||||||||| || ||||||||| ||||||||||  ||| |||||||    
T  30751666 tggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttatagaaacagtttatagcatgtccataa 30751576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 491
Target Start/End: Original strand, 3610760 - 3610817
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttata 491  Q
    |||| |||||||| |||||||||||||| || |||  |||||||||||||||||||||    
T  3610760 ttcagcttatttctataagctctctaggatagtttacgaaaacaacttatagcttata 3610817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 494
Target Start/End: Complemental strand, 24895399 - 24895346
Alignment:
Q  441 tatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    ||||||||||||||||| |   ||| ||||||||||||||||||||||||||||    
T  24895399 tatttccataagctctccacaatatcttgtgaaaacaacttatagcttatatga 24895346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 494
Target Start/End: Complemental strand, 38010759 - 38010704
Alignment:
Q  439 cttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||||||||||| |||||||| ||  || |||||||| ||||||||||||||||    
T  38010759 cttatttccataagttctctaggatagattatgaaaacagcttatagcttatatga 38010704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 492
Target Start/End: Original strand, 15075110 - 15075163
Alignment:
Q  439 cttatttccataagctctctaggttattttgtgaaaacaacttatagcttatat 492  Q
    ||||||||||||||||||||| | || ||| |||||| |||||||| |||||||    
T  15075110 cttatttccataagctctctaaggtagtttatgaaaataacttataacttatat 15075163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 539
Target Start/End: Original strand, 22388039 - 22388092
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaac 539  Q
    |||| |||||||| | ||||| ||||||||||| |||||||| |||||||||||    
T  22388039 cttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaac 22388092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 494
Target Start/End: Complemental strand, 53315385 - 53315316
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||||| || ||||||||| |||||||||||||||||  ||| ||| |||| ||||||||||||||||    
T  53315385 taagctatttttaacttattttcataagctctctaggtttgtttttgagaacagcttatagcttatatga 53315316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 329 - 420
Target Start/End: Original strand, 55870265 - 55870356
Alignment:
Q  329 tggattaacttatttcagcttatttattgaaataaacatttgtgtgactgtttgagacagcttataggaacagtttatgacatatccataag 420  Q
    ||||||||||||||| || |||| || ||| ||||||||||||| |||| ||||||| |||||||   || |||||||||| | ||||||||    
T  55870265 tggattaacttatttgagtttatctaatgacataaacatttgtgagactctttgagatagcttatgaaaaaagtttatgacctgtccataag 55870356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 494
Target Start/End: Original strand, 30207581 - 30207651
Alignment:
Q  424 gtaagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    ||||||| | |||| ||||||||||||| ||||||| | ||  || |||||||||||||||||||||||||    
T  30207581 gtaagctgttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatga 30207651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 11264351 - 11264291
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||||||||||||||||||||||||| |   || ||||||||||||||| | |||||||    
T  11264351 ttcaacttatttccataagctctctaggatggcttatgaaaacaacttataacatatatga 11264291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 24929543 - 24929483
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| ||||||||||||||||||||||   | ||| ||||||||||||||||||| |||||    
T  24929543 ttcagcttatttccataagctctctagtagagtttatgaaaacaacttatagcttttatga 24929483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 49219189 - 49219129
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| ||||||||||||| |||| || | || ||| |||||||||||||||||||||||||    
T  49219189 ttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatga 49219129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 541
Target Start/End: Complemental strand, 24193520 - 24193465
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaa 541  Q
    ||||||||||||||| ||||| |||||| |||  |||||||| |||||||||||||    
T  24193520 cttatatgataagcgtttatgctataagtgctcaattaagttgtttatccaaacaa 24193465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 540
Target Start/End: Complemental strand, 486012 - 485962
Alignment:
Q  490 tatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||||||||| ||||||||||| |||||||  || |||||||||    
T  486012 tatgataagcgcttatgctataagcgcttaattaagtagttcatccaaaca 485962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 6466057 - 6466123
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttata 491  Q
    |||||||| |||||||||||||||||| ||||||||  ||  || || ||||||||||||| |||||    
T  6466057 taagctattttcaacttatttccataatctctctagaatagcttatggaaacaacttatagattata 6466123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 537
Target Start/End: Original strand, 22684652 - 22684702
Alignment:
Q  487 ttatatgataagcgcttatggtataagcgcttgattaagttatttatccaa 537  Q
    ||||||||||||||| ||||||||||||  || |||||||| |||||||||    
T  22684652 ttatatgataagcgcatatggtataagcaattaattaagttgtttatccaa 22684702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 540
Target Start/End: Complemental strand, 24443973 - 24443919
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||||| ||||||| ||||||||||| || ||||| | ||||||||||    
T  24443973 cttatatgataagtgcttatgctataagcgcttaataaagttgtgtatccaaaca 24443919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 2996718 - 2996629
Alignment:
Q  331 gattaacttatttcagcttatttattgaaataaacatttgtgtgactgtttgagacagcttataggaacagtttatgacatatccataag 420  Q
    ||||| ||||||| | |||||||||||| |||| || || || |||||||||||| |||||||   ||||  ||||||||| ||||||||    
T  2996718 gattagcttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataag 2996629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 543
Target Start/End: Complemental strand, 11802471 - 11802406
Alignment:
Q  478 acttatagcttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaagg 543  Q
    ||||||||  |||||||||| || ||||  ||||| ||||| ||||||||||||||| ||||||||    
T  11802471 acttataggatatatgataaacgtttatactataaacgcttaattaagttatttatcaaaacaagg 11802406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 547
Target Start/End: Complemental strand, 33641043 - 33640982
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaaggtcat 547  Q
    ||||||||||||||| ||||  ||||||| ||| |||||| | |||||||||||| ||||||    
T  33641043 cttatatgataagcgattattctataagcacttaattaagctgtttatccaaacagggtcat 33640982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 494
Target Start/End: Complemental strand, 36048592 - 36048523
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    ||||||||  ||| ||||||||||||||||||||| | ||  || |||||| | ||||||||||||||||    
T  36048592 taagctattgtcagcttatttccataagctctctaagatagcttttgaaaatagcttatagcttatatga 36048523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 492
Target Start/End: Complemental strand, 42866113 - 42866060
Alignment:
Q  439 cttatttccataagctctctaggttattttgtgaaaacaacttatagcttatat 492  Q
    |||| |||||||||||||| ||| ||  || |||||||||||||||||||||||    
T  42866113 cttacttccataagctctcaaggatagcttatgaaaacaacttatagcttatat 42866060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 494
Target Start/End: Complemental strand, 18630722 - 18630670
Alignment:
Q  442 atttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| |||||||||| | || ||  ||||||||||||||||||||||||||||    
T  18630722 attttcataagctctgttggatagcttgtgaaaacaacttatagcttatatga 18630670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 45128330 - 45128390
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| |||||||||||||||| | ||||  | ||| ||||||||| |||||||||||||||    
T  45128330 ttcagcttatttccataagctttataggacagtttatgaaaacaatttatagcttatatga 45128390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 536
Target Start/End: Original strand, 24828734 - 24828800
Alignment:
Q  470 tgaaaacaacttatagcttatatgataagcgcttatggtataagcgcttgattaagttatttatcca 536  Q
    |||||| |||||||| ||||||||||||| | ||||| ||||||| ||| |||| ||||||||||||    
T  24828734 tgaaaataacttataacttatatgataagtgtttatgttataagctcttaattatgttatttatcca 24828800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 540
Target Start/End: Complemental strand, 3155110 - 3155057
Alignment:
Q  487 ttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||| |||||||| ||||||||||| | |||||| ||||||||||||    
T  3155110 ttatatgataaacgcttatgctataagcgcttaaataagttgtttatccaaaca 3155057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 547
Target Start/End: Complemental strand, 32975913 - 32975852
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaaggtcat 547  Q
    ||||||||| ||||||||||| ||||| ||||| |||||||| |||||| ||||| ||||||    
T  32975913 cttatatgagaagcgcttatgctataaacgcttaattaagttgtttatctaaacagggtcat 32975852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 738464 - 738507
Alignment:
Q  329 tggattaacttatttcagcttatttattgaaataaacatttgtg 372  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||    
T  738464 tggattaacttatttgagcttatctattgagataaacatttgtg 738507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 494
Target Start/End: Complemental strand, 2117448 - 2117393
Alignment:
Q  439 cttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||||| |||||||||||||| ||  || |||||||||||||||| ||||||||    
T  2117448 cttatttcaataagctctctaggataacttatgaaaacaacttatagattatatga 2117393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 537
Target Start/End: Original strand, 6078428 - 6078475
Alignment:
Q  490 tatgataagcgcttatggtataagcgcttgattaagttatttatccaa 537  Q
    ||||||||||||||||| ||||| ||||| |||||||| |||||||||    
T  6078428 tatgataagcgcttatgttataaccgcttaattaagttgtttatccaa 6078475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 540
Target Start/End: Original strand, 14340938 - 14340992
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    ||||||||||||| | ||||| ||||||| ||| |||||||| ||||||||||||    
T  14340938 cttatatgataagtgtttatgttataagcacttaattaagttgtttatccaaaca 14340992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 540
Target Start/End: Complemental strand, 21920009 - 21919955
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaaca 540  Q
    |||||||||||||  |||||| ||||||||||| ||||||||  |||||||||||    
T  21920009 cttatatgataagtacttatgctataagcgcttaattaagtttcttatccaaaca 21919955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 541
Target Start/End: Original strand, 2785805 - 2785858
Alignment:
Q  488 tatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaa 541  Q
    ||||||| ||||| ||||| |||||||| || |||||||| |||||||||||||    
T  2785805 tatatgacaagcgtttatgctataagcgattaattaagttgtttatccaaacaa 2785858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 33738121 - 33738072
Alignment:
Q  336 acttatttcagcttatttattgaaataaacatttgtgtgactgtttgaga 385  Q
    |||||||| ||||| |||||||| ||||| ||||||| ||||||||||||    
T  33738121 acttatttgagcttgtttattgacataaatatttgtgagactgtttgaga 33738072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 281868 - 281928
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| ||||||||||| ||||||||||| ||  || |||| ||| ||||||||||||||||    
T  281868 ttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagcttatatga 281928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 1275199 - 1275139
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| ||||||||||||||||||| ||| ||   | |||||||| ||||||||||||||||    
T  1275199 ttcagcttatttccataagctctccaggataacatatgaaaacagcttatagcttatatga 1275139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 540
Target Start/End: Original strand, 3204699 - 3204731
Alignment:
Q  508 tataagcgcttgattaagttatttatccaaaca 540  Q
    |||||||||||||||||||| ||||||||||||    
T  3204699 tataagcgcttgattaagttgtttatccaaaca 3204731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 538
Target Start/End: Original strand, 4247219 - 4247271
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaa 538  Q
    |||||||||||||  |||||| ||||||| ||| |||||||| ||||||||||    
T  4247219 cttatatgataagtacttatgctataagcacttaattaagttgtttatccaaa 4247271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 493
Target Start/End: Complemental strand, 7148725 - 7148657
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatg 493  Q
    |||||||| |||||||||||| ||||||||||| ||| ||  || | |||| | |||||||||||||||    
T  7148725 taagctattttcaacttattttcataagctctccagggtagcttattaaaataccttatagcttatatg 7148657  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 8035168 - 8035228
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||||||||| | |||||| |||||| ||  || |||||||||||| ||||||||||||    
T  8035168 ttcaacttattttcgtaagctttctaggataacttatgaaaacaacttctagcttatatga 8035228  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 31671094 - 31671154
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||| ||||||| |||||||| |||||| || |||  ||||||| ||||||||||||||||    
T  31671094 ttcagcttattttcataagctatctaggatagtttacgaaaacagcttatagcttatatga 31671154  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 410
Target Start/End: Original strand, 32171295 - 32171387
Alignment:
Q  318 ttaggcttgtgtggattaacttatttcagcttatttattgaaataaacatttgtgtgactgtttgagacagcttataggaacagtttatgaca 410  Q
    |||||| ||| ||||||  ||||||||||||||  |||||| |||| || ||| | |||||||||||| |||||||   ||||| ||||||||    
T  32171295 ttaggcctgtttggattgtcttatttcagcttaagtattgacataagcacttgcgagactgtttgagagagcttatgaaaacagcttatgaca 32171387  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 419
Target Start/End: Complemental strand, 34939881 - 34939801
Alignment:
Q  339 tatttcagcttatttattgaaataaacatttgtgtgactgtttgagacagcttataggaacagtttatgacatatccataa 419  Q
    ||||||||||||| || ||| |||||||||||||  |||||||  || ||||||  | ||||| ||||||||| |||||||    
T  34939881 tatttcagcttatctagtgacataaacatttgtgaaactgttttggagagcttacggaaacagcttatgacatgtccataa 34939801  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 494
Target Start/End: Complemental strand, 10285919 - 10285850
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||| | ||||||||||||||||||| |||||| ||||  || || |||| |||||||||||||||||    
T  10285919 taagctgttttcaacttatttccataagttctctatgttagcttatgcaaacgacttatagcttatatga 10285850  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 440 - 492
Target Start/End: Complemental strand, 757499 - 757447
Alignment:
Q  440 ttatttccataagctctctaggttattttgtgaaaacaacttatagcttatat 492  Q
    |||||||||||||||||| ||| || ||| |||||||| ||||||||||||||    
T  757499 ttatttccataagctctccaggataatttttgaaaacatcttatagcttatat 757447  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 22681210 - 22681265
Alignment:
Q  439 cttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||||||||||| |||||||| ||  || |||||||| ||||||||||||||||    
T  22681210 cttatttccataagttctctaggatagattatgaaaacagcttatagcttatatga 22681265  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 30552669 - 30552724
Alignment:
Q  439 cttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    ||||||||||||||||||||||| || ||| |||||| || |||||||| ||||||    
T  30552669 cttatttccataagctctctaggatagtttatgaaaataatttatagctgatatga 30552724  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 542
Target Start/End: Complemental strand, 5942854 - 5942804
Alignment:
Q  492 tgataagcgcttatggtataagcgcttgattaagttatttatccaaacaag 542  Q
    ||||||| |||||||  |||||||||| |||||||| ||||||||||||||    
T  5942854 tgataagtgcttatgcaataagcgcttaattaagttgtttatccaaacaag 5942804  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 544
Target Start/End: Complemental strand, 32634279 - 32634221
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaaggt 544  Q
    ||||| |||||| | ||||||||||||||| |  |||||||| ||||||||||||||||    
T  32634279 cttatgtgataaacccttatggtataagcgttaaattaagttgtttatccaaacaaggt 32634221  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 494
Target Start/End: Complemental strand, 11513957 - 11513888
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||||| |||| |||||||||| ||| |||| | | ||  || |||||||||||||||||||||||||    
T  11513957 taagctattttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatga 11513888  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 487
Target Start/End: Complemental strand, 16867789 - 16867736
Alignment:
Q  434 ttcaacttatttccataagctctctaggttattttgtgaaaacaacttatagct 487  Q
    |||||||||||||||||||||||| | | ||  ||||||||||| |||||||||    
T  16867789 ttcaacttatttccataagctctccaagatagcttgtgaaaacaccttatagct 16867736  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 494
Target Start/End: Complemental strand, 39983401 - 39983332
Alignment:
Q  425 taagctatattcaacttatttccataagctctctaggttattttgtgaaaacaacttatagcttatatga 494  Q
    |||||||| ||||  |||||| ||| ||||||| ||| ||  || |||||||||||||||||||||||||    
T  39983401 taagctattttcagtttattttcattagctctccaggatagcttatgaaaacaacttatagcttatatga 39983332  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 542
Target Start/End: Original strand, 14316962 - 14317010
Alignment:
Q  494 ataagcgcttatggtataagcgcttgattaagttatttatccaaacaag 542  Q
    |||||| |||||| ||||||||||| ||||| || ||||||||||||||    
T  14316962 ataagcacttatgctataagcgcttaattaatttgtttatccaaacaag 14317010  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 547
Target Start/End: Original strand, 26176 - 26237
Alignment:
Q  486 cttatatgataagcgcttatggtataagcgcttgattaagttatttatccaaacaaggtcat 547  Q
    ||||||||||||| ||||||| ||||||| ||| |||||| | |||||||||| | ||||||    
T  26176 cttatatgataagtgcttatgctataagcacttaattaaggtgtttatccaaagagggtcat 26237  T

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