View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13506_low_4 (Length: 567)
Name: NF13506_low_4
Description: NF13506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13506_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 55301095 - 55301351
Alignment:
| Q |
17 |
actaataaatacagagacaacagatttgaaagaggaactcagagacttttggttgggtggtcaaaagactgcttctgaacaaacagtgtcaatggaatta |
116 |
Q |
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| T |
55301095 |
actaataaatacagagacaacaggtttgaaagaggaactcagagacttttggttgggtggtcaaaagactgcttctgaacaaacagtgtcaatggaatta |
55301194 |
T |
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| Q |
117 |
ccttgtgagcataagtcgatgaacacggctgaggaaggaaatatgtatgagtatctgtgggcaaccaaataccagcccaagatattggcagacttcatct |
216 |
Q |
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| T |
55301195 |
ccttgtgagcataagtcgatgaacacggctgtggaaggaaatatgtatgagtatctgtgggcaaccaaataccagcccaagatattggcagacttcatct |
55301294 |
T |
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| Q |
217 |
gcaacagagataaagcacttcagctgaaagcattggtaagaagaatatgatgcttcg |
273 |
Q |
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| T |
55301295 |
gcaacagagataaagcacttcagctgaaagcattggtaagaagaatatgatgcttcg |
55301351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 328 - 550
Target Start/End: Original strand, 55301406 - 55301628
Alignment:
| Q |
328 |
caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt |
427 |
Q |
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| T |
55301406 |
caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt |
55301505 |
T |
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| Q |
428 |
gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtatattcattcatcaatcttg |
527 |
Q |
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| T |
55301506 |
gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtatattcattcatcaatcttg |
55301605 |
T |
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| Q |
528 |
tccttgtattctactatttttag |
550 |
Q |
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| T |
55301606 |
tccttgtattctactatttttag |
55301628 |
T |
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