View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13506_low_5 (Length: 434)
Name: NF13506_low_5
Description: NF13506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13506_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8696962 - 8696751
Alignment:
| Q |
1 |
acacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8696962 |
acacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaa |
8696863 |
T |
|
| Q |
101 |
tctttcttatggatctaatgaatatctattatacattctagatcatggtaatataatgcatgcttaattagcacaataacaccgatgctaatatcagatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8696862 |
tctttcttatggatctaatgaatatctattatatattctacat---------------catgcttaattagcacaataacaccgatgctaatatcagatt |
8696778 |
T |
|
| Q |
201 |
tttgaccgactaactcttattaatttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8696777 |
tttgaccgactaactcttattaatttt |
8696751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 229 - 419
Target Start/End: Complemental strand, 8696724 - 8696539
Alignment:
| Q |
229 |
tcttcttgcttagcgcaactcattgcacgtaataatggactttaataaacgcaacatgggacagtattacagcaaagaaaagaaacaaaatagctaagca |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8696724 |
tcttcttgcttagcgcaactcattgcacgtaataatggacttcaataaaagcaacatgg-aca--attacagcaaagaaaagaaacaaaatagctaagca |
8696628 |
T |
|
| Q |
329 |
taaattgtatgtgaggatttgacccaaaaaatttgcatgtgggaactctctatataagtaacaaaacccattagcattttcatcaaatttg |
419 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8696627 |
taaattgtatgtggggatttgacccaaaaaatttgcatgtgggaa--ctctatataagtaacaaaacccattagcattttcatcaaatttg |
8696539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 267 - 414
Target Start/End: Original strand, 8692561 - 8692706
Alignment:
| Q |
267 |
actttaataaacgcaacatgggacagtattacagcaaagaaaagaaacaaaatagctaagcataaattgtatgtgaggatttgacccaaaaaatttgcat |
366 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| |||||| |
|
|
| T |
8692561 |
acttcaataaaagcaacatgggaca--attacagcaaagaaaagaaacaaaatagttaagcataaattgtatgtgggggtttgacccaaaaaacttgcat |
8692658 |
T |
|
| Q |
367 |
gtgggaactctctatataagtaacaaaacccattagcattttcatcaa |
414 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8692659 |
gtgggaactctctatataaataacaaaacccattagcattttcatcaa |
8692706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 8677720 - 8677916
Alignment:
| Q |
3 |
acaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaatc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||| ||||||||||| ||||| |
|
|
| T |
8677720 |
acaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtataaatagtttcctcgtatctcatcaaggtggacaatc |
8677819 |
T |
|
| Q |
103 |
tttcttatggatctaatgaatatctattatacattctagatcatggtaat-------ataatgcatgcttaattagcacaataacaccgatgctaatat |
194 |
Q |
| |
|
||| |||||||||||||| |||||||||| |||||| ||||||||| | |||||||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
8677820 |
tttaatatggatctaatgattatctattat--attctacatcatggtactataatgcataatgcatgcttaattaacacaataacgcggatgctaatat |
8677916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 419
Target Start/End: Original strand, 8678379 - 8678503
Alignment:
| Q |
306 |
aaaagaaacaaaatagctaagcataaattgtatgtgaggatttgacccaaaaaat-ttgcatgtg-----------ggaactctctatataagtaacaaa |
393 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||| ||||||||| |||| |||||||||||| |||||| |
|
|
| T |
8678379 |
aaaagaaacaaaatagctaagcat-aattgcatgtggggatttgaccaaaaaaatattgcatgtgggaatatgttaggaaatctctatataagcaacaaa |
8678477 |
T |
|
| Q |
394 |
acccattagcattttcatcaaatttg |
419 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
8678478 |
ccccattagcattttcatcaaatttg |
8678503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 8678314 - 8678347
Alignment:
| Q |
225 |
tttctcttcttgcttagcgcaactcattgcacgt |
258 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
8678314 |
tttctgttcttgcttagcgcaactcattgcacgt |
8678347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University