View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13506_low_7 (Length: 388)

Name: NF13506_low_7
Description: NF13506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13506_low_7
NF13506_low_7
[»] chr4 (4 HSPs)
chr4 (18-223)||(4167488-4167692)
chr4 (280-369)||(4167749-4167838)
chr4 (52-203)||(4174669-4174826)
chr4 (302-368)||(4174914-4174979)
[»] chr3 (4 HSPs)
chr3 (102-191)||(10018774-10018863)
chr3 (102-191)||(10123314-10123403)
chr3 (136-193)||(10180005-10180062)
chr3 (102-191)||(10256088-10256177)
[»] chr7 (4 HSPs)
chr7 (137-193)||(23613771-23613827)
chr7 (151-193)||(23613717-23613759)
chr7 (105-185)||(8083389-8083469)
chr7 (105-185)||(41832664-41832744)
[»] chr6 (1 HSPs)
chr6 (105-193)||(24249770-24249858)
[»] chr5 (2 HSPs)
chr5 (105-185)||(21254206-21254286)
chr5 (105-185)||(21256678-21256758)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 4167488 - 4167692
Alignment:
Q  18 tcaatttcaaattagacagcgaattattatcaa-tttcaatgatttttacatggttgatttcatatgaaacttaatcgttgatcatgttgttacgaaacg 116  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||  ||||||||||||    
T  4167488 tcaatttcaaattagacagcaaattattatcaaatttcaatgatttttacctcgttgatttcatatgaaacttagtcgttgatcat--tgttacgaaacg 4167585  T
Q  117 tggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaacatataccttctaataagaggtg 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  4167586 tggcatcaatagaaggaatgagagaaaagttactaactctttttatcgatgaaaatagaatattacaaatgaatgaacatataccttctaataagaggtg 4167685  T
Q  217 gttacaa 223  Q
    |||||||    
T  4167686 gttacaa 4167692  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 4167749 - 4167838
Alignment:
Q  280 gtacgtggaatgttagaaacttagaaacttagccaagatctttcacattatttccttatgattttttctaacataagaggatcctaatcc 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4167749 gtacgtggaatgttagaaacttagaaacttagccaagatctttcacattatttccttatgattttttctaacataagaggatcctaatcc 4167838  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 4174669 - 4174826
Alignment:
Q  52 ttcaatgatttttacatggttgatttcatatgaaacttaatcgttga------tcatgttgttacgaaacgtggcatcaatagaagaaatgagagaaaag 145  Q
    ||||||||||||||| |  |||||||||||||||||||| |||| ||      ||||||||||| ||||| |  |||  ||| ||  |||||||||||||    
T  4174669 ttcaatgatttttacctcattgatttcatatgaaacttagtcgtcgaggtcgatcatgttgttatgaaacattacattcatataaagaatgagagaaaag 4174768  T
Q  146 ttactaactctttttatcgatgaaaataaaatattacaaatgagtgaacatatacctt 203  Q
    |||  |||||||| |||  ||||||||| ||||||||||||||||||||| |||||||    
T  4174769 ttagaaactctttgtattaatgaaaatagaatattacaaatgagtgaacaaatacctt 4174826  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 4174914 - 4174979
Alignment:
Q  302 agaaacttagccaagatctttcacattatttccttatgattttttctaacataagaggatcctaatc 368  Q
    |||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  4174914 agaaacttagccaagatcttccacattattttcttatgattttttc-aacataagaggatcctaatc 4174979  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 10018774 - 10018863
Alignment:
Q  102 tgttgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtg 191  Q
    |||||||| ||||| ||||||| || |||  || ||||||||| | || |||||||| ||| |||| |||| ||||||||||||||||||    
T  10018774 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaatgagtg 10018863  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 10123314 - 10123403
Alignment:
Q  102 tgttgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtg 191  Q
    |||||||| ||||| ||||||| ||  ||  || ||||||||| | || |||||||| ||| |||| |||| ||||||||||||||||||    
T  10123314 tgttgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaatgagtg 10123403  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 10180005 - 10180062
Alignment:
Q  136 gagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaa 193  Q
    ||||||||| | || |||||||| ||| |||| |||| ||||||||||||||||||||    
T  10180005 gagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaatgagtgaa 10180062  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 10256088 - 10256177
Alignment:
Q  102 tgttgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtg 191  Q
    |||||||| ||||| ||||||| || |||  || ||||||||| | || |||| ||| ||| |||| |||| ||||||||||||||||||    
T  10256088 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactttttgtattgatggaaatgaaatattacaaatgagtg 10256177  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 23613827 - 23613771
Alignment:
Q  137 agagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaa 193  Q
    |||||||| | || |||||||||||| |||| |||| ||||||||||||||||||||    
T  23613827 agagaaaactaacaaactctttttattgatggaaatgaaatattacaaatgagtgaa 23613771  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 23613759 - 23613717
Alignment:
Q  151 aactctttttatcgatgaaaataaaatattacaaatgagtgaa 193  Q
    |||||||||||| |||| |||| ||||||||||||||||||||    
T  23613759 aactctttttattgatggaaatgaaatattacaaatgagtgaa 23613717  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 8083389 - 8083469
Alignment:
Q  105 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 185  Q
    ||||| ||||| ||||||| || |||| || ||||||||| | |  |||||||| ||| ||||||||| ||||||||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaaaactaaaaaactctttctattgatgaaaatgaaatattacaaa 8083469  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 41832744 - 41832664
Alignment:
Q  105 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 185  Q
    ||||| ||||| ||||||| || |||| |||||||||||| | |  |||||||| ||| |||||||||  |||||||||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaattgaatattacaaa 41832664  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 24249858 - 24249770
Alignment:
Q  105 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaa 193  Q
    ||||| ||||| ||||||||||  ||  |||||||||||| | || |||||||| |||  ||| ||||  |||||||||||||||||||    
T  24249858 tgttaggaaacatggcatcaatgtaaagaatgagagaaaactaacaaactctttgtattaatggaaatggaatattacaaatgagtgaa 24249770  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 21254286 - 21254206
Alignment:
Q  105 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 185  Q
    ||||| ||||| ||||||| || |||| || ||||||||||| || |||||||| ||| ||||||||   |||||||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaaaagtaacaaactctttctattgatgaaaaaggaatattacaaa 21254206  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 21256758 - 21256678
Alignment:
Q  105 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 185  Q
    ||||| ||||| ||||||| || |||| || ||||||||| | || |||||||| ||| |||||||||  |||||||||||    
T  21256758 tgttaggaaacatggcatccatggaaggaaggagagaaaactaacaaactctttctattgatgaaaatggaatattacaaa 21256678  T

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