View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13506_low_9 (Length: 360)
Name: NF13506_low_9
Description: NF13506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13506_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 104 - 344
Target Start/End: Original strand, 34868779 - 34869019
Alignment:
| Q |
104 |
caaaggtagtgatgttcctgcaaaacgaacacggtaagctcgatctccgatgagtttctcgcaggtgtcacggaagctggccaggccgctgtggacaccc |
203 |
Q |
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| T |
34868779 |
caaaggtagtgatgttcctgcaaaacgaacacggtaagctcgatctccgatgagtttctcgcaggtgtcacggaagctggccaggccgctgtggacaccc |
34868878 |
T |
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| Q |
204 |
gcagatatgagaaccagaaacattaccacctgcagagtcagtgcaagacagaatttgtgacttcagtagcattttcttcagaagaagctctcgtgactag |
303 |
Q |
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| T |
34868879 |
gcagatatgagaaccagaaacattaccacctgcagagtcagtgcaagacagaatttgtgacttcagtagcattttcttcagaagaagctctcgtgactag |
34868978 |
T |
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| Q |
304 |
ttttgatgaaaacaagagtggctttgaagaaaaataaagaa |
344 |
Q |
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| T |
34868979 |
ttttgatgaaaacaagagtggctttgaagaaaaataaagaa |
34869019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 77 - 239
Target Start/End: Original strand, 34876035 - 34876198
Alignment:
| Q |
77 |
acaaactcacagtcatggttagagagccaaaggtagtgatgttcctgcaaaacgaacacggtaagctcgatctccgatgagtttctcgcaggtgtcacgg |
176 |
Q |
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| T |
34876035 |
acaaactcacaatcattgt--gagagccaaaggtagcgatgtgcctgcaaaaagaacacggtaagctcgttcaccgatgagtttctctccggtgtcacgg |
34876132 |
T |
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| Q |
177 |
aagctggccaggccgctgtggacacccgcagatatgagaaccag---aaacattaccacctgcaga |
239 |
Q |
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| T |
34876133 |
aagctggccaggccactgtggacacccgcaaatatgagaaccaggaccaacattaccacctgcaga |
34876198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34868702 - 34868782
Alignment:
| Q |
1 |
ggtataagagaatggatacgggcacaagtcattgaggataataaggtttttctgcagcttataagaaaaaatgtgtacaaa |
81 |
Q |
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| T |
34868702 |
ggtataagagaatggatatgggcacaagtcattgaggataataaggtttttctgcagcttataagaaaaaatgtgtacaaa |
34868782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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