View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13507_high_5 (Length: 410)
Name: NF13507_high_5
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 25589381 - 25589007
Alignment:
| Q |
18 |
tctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccatggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25589381 |
tctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccatggc |
25589282 |
T |
|
| Q |
118 |
agatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtaccgttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25589281 |
agatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtaccgttg |
25589182 |
T |
|
| Q |
218 |
acaagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaagaggttgtcaagctctggaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25589181 |
acaagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaagaggttgtcaagctctggaa |
25589082 |
T |
|
| Q |
318 |
tgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25589081 |
tgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgt |
25589007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 25599033 - 25598659
Alignment:
| Q |
18 |
tctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccatggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25599033 |
tctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccatggc |
25598934 |
T |
|
| Q |
118 |
agatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtaccgttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25598933 |
agatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtaccgttg |
25598834 |
T |
|
| Q |
218 |
acaagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaagaggttgtcaagctctggaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25598833 |
acaagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaagaggttgtcaagctctggaa |
25598734 |
T |
|
| Q |
318 |
tgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25598733 |
tgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgt |
25598659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 25584538 - 25584166
Alignment:
| Q |
20 |
tgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccatggcag |
119 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
25584538 |
tgaatcacctgtaatggcgtgacaccaccagcgatgtcccagtcatttttatagtcaggaacaatgtacttaggcactgcaccggataataccatggcag |
25584439 |
T |
|
| Q |
120 |
atatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtaccgttgac |
219 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||| ||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||| |
|
|
| T |
25584438 |
atatagctgataaatgacaatttcgaggaagaataagaaattctcctggtgaacaggttgccattattgctgcctgaatcccacaagtagtacctccgac |
25584339 |
T |
|
| Q |
220 |
aagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaagaggttgtcaagctctggaatg |
319 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||||| || |||| | |
|
|
| T |
25584338 |
aagaaaccatgtctctgatgaaccaaaaagtttggatgcttctgtttgtgcttctaatataggtccttggggacagaagaggttgtcaagttcaggaa-g |
25584240 |
T |
|
| Q |
320 |
ct-agacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgt |
392 |
Q |
| |
|
|| | ||||||||| ||||||||||| |||||||||| |||||| ||| | |||||| ||||||||||||| |
|
|
| T |
25584239 |
ctcgggtaaatcatgaacatatggtcttcttccaatgagtcgagtcatcgaggcaggagcagcatggcctctgt |
25584166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 281 - 392
Target Start/End: Complemental strand, 48465997 - 48465887
Alignment:
| Q |
281 |
ggcccttggggacaaaagaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcgg |
380 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
48465997 |
ggcccttggggacaaaagaggttgtcaagttccggaatgctggacaaatcatgagcatattgtctta-tccaatgagttggatcaatgaagaaggagcgg |
48465899 |
T |
|
| Q |
381 |
catggcctctgt |
392 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48465898 |
catggcctctgt |
48465887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 392
Target Start/End: Complemental strand, 42076773 - 42076675
Alignment:
| Q |
294 |
aaaagaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgt |
392 |
Q |
| |
|
||||||||||| |||| || ||||| | ||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
42076773 |
aaaagaggttgacaagttccagaatgttgtacaaatcatgagcatatagtcttattccaatgagttgggtcaatgaagaaggagcggcatggcctctgt |
42076675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University