View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13507_high_6 (Length: 400)
Name: NF13507_high_6
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 5914013 - 5914382
Alignment:
| Q |
19 |
ataggttcagttctcgatcagacttgtcggtcctttccgagtctaattacactgcacaaaacacacaaattgtatttgtctttctagttctctatattaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5914013 |
ataggttcagttctcgatcagacttgtcggtcctttccgagtctaattacactgcacaaaacac--aaattgtatttgtctttctagttctctatattaa |
5914110 |
T |
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| Q |
119 |
ctcatttaaccgtctttatgcaggccaccgtgcattttaccatattcggaaaagagaacatagtagacctagatgttagtgaaattgttccagagactaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5914111 |
ctcatttaaccgtctttatgcaggccaccgtgcattttaccatgttcggaaaagagaacatagtagacctagatgttagtgaaattgttccagagactaa |
5914210 |
T |
|
| Q |
219 |
ctaatgcctttaggttctcgccttttcctgatggtatgtttcactctgaaagtaaaacttcgaagagtcgcggactgcgtgctctttcagatttttccac |
318 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5914211 |
ctaatgccgttaggttctcgccttttcctgatggtatgtttcactctgaaagtaaaacttcgaagagtcgcggactgcgtgctctttcagatttttccac |
5914310 |
T |
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| Q |
319 |
ttgtcgatgaagtccattttttagagaaaagctaaatgcatttttacctagtgcatacttgtatattatatt |
390 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5914311 |
ttgtcgatgaagtccattttttaaagaaaagctaaatgcatttttacctagtgcatacttgtatattatatt |
5914382 |
T |
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