View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13507_low_10 (Length: 379)
Name: NF13507_low_10
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_low_10 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 45846421 - 45846058
Alignment:
| Q |
1 |
ttaccggttactcaatcctctctggtctcgccgttggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctccttggtctatgttt |
100 |
Q |
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| T |
45846421 |
ttaccggttactcaatcctctccggtctcgccgttggaatggaacctatttgtggacaagcttttggtgcaaaaagattcactctccttggtctatgttt |
45846322 |
T |
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| Q |
101 |
acaaaaaaccattctcttgctactcttaacttctatccctatttcattactttggctttacacaaaacatatccttcttttatgtggccaagaagaagat |
200 |
Q |
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| T |
45846321 |
acaaaaaaccattctcttgctactcttaacttctatccctatttcattactttggctttacacaaaacatatccttcttttatgtggccaagaagaagat |
45846222 |
T |
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| Q |
201 |
atagctacacaagctcaaatctatcttctatattccattcctgatctcatagcacaatcgtttttacaccctttaagaatttaccttagaagccaatcca |
300 |
Q |
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| T |
45846221 |
atagctacacaagctcaaatctatcttctatattccattcctgatctcttagcacaatcgtttttacaccctttaagaatttaccttagaagccaatcca |
45846122 |
T |
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| Q |
301 |
ttactctgcctctcacactttgtgctactttagcaatttttcttcacattcccataaactattt |
364 |
Q |
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| T |
45846121 |
ttactctgcctctcacactttgtgctactttagcaatttttcttcacattcccataaactattt |
45846058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 6 - 364
Target Start/End: Original strand, 23701 - 24059
Alignment:
| Q |
6 |
ggttactcaatcctctctggtctcgccgttggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctccttggtctatgtttacaaa |
105 |
Q |
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|||||||| || || |||||||| || ||||| |||||||| |||||||| |||||||||||||| |||| ||||||||| |||||||| ||| | |||| |
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| T |
23701 |
ggttactccattctttctggtcttgctgttggtatggaaccaatttgtggtcaagcttttggtgctaaaaaattcactcttcttggtctttgtcttcaaa |
23800 |
T |
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| Q |
106 |
aaaccattctcttgctactcttaacttctatccctatttcattactttggctttacacaaaacatatccttcttttatgtggccaagaagaagatatagc |
205 |
Q |
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||||||||| ||||| || || ||| || || || || || |||||||||| ||| | || ||| | || | | |||||| ||||| ||||| |
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| T |
23801 |
gaaccattcttttgcttcttttggtttcaataccaatatctttttcatggctttacatgaaaaaaatgcttttgttttttaaccaagatgaagaaatagc |
23900 |
T |
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| Q |
206 |
tacacaagctcaaatctatcttctatattccattcctgatctcatagcacaatcgtttttacaccctttaagaatttaccttagaagccaatccattact |
305 |
Q |
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||| ||||||| ||| |||||||||| ||||||||||| || || ||||| ||| |||||||||| ||||||||| | || | |||||||||||| |
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| T |
23901 |
aacaatggctcaaacttatattctatattcaattcctgatcttattgctcaatcctttatacaccctttgagaatttacttaaggactcaatccattact |
24000 |
T |
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| Q |
306 |
ctgcctctcacactttgtgctactttagcaatttttcttcacattcccataaactattt |
364 |
Q |
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| T |
24001 |
cttcctcttacactttgtgcaactttttcaatccttcttcacataccaataaattattt |
24059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 2989837 - 2989923
Alignment:
| Q |
6 |
ggttactcaatcctctctggtctcgccgttggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctccttggt |
92 |
Q |
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|||||||| || ||||||||||| ||| | |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| |
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| T |
2989837 |
ggttactccattctctctggtcttgccatgggaatggaacctatttgtggtcaagcttttggtgctaaaagattcaaactccttggt |
2989923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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