View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13507_low_11 (Length: 343)
Name: NF13507_low_11
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 5914013 - 5914327
Alignment:
| Q |
19 |
ataggttcagttctcgatcagacttgtcggtcctttccgagtctaattacactgcacaaaacacacaaattgtatttgtctttctagttctctatattaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5914013 |
ataggttcagttctcgatcagacttgtcggtcctttccgagtctaattacactgcacaaaacac--aaattgtatttgtctttctagttctctatattaa |
5914110 |
T |
|
| Q |
119 |
ctcatttaaccgtctttatgcaggccaccgtgcattttaccatattcggaaaagagaacatagtagacctagatgttagtgaaattgttccagagactaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5914111 |
ctcatttaaccgtctttatgcaggccaccgtgcattttaccatgttcggaaaagagaacatagtagacctagatgttagtgaaattgttccagagactaa |
5914210 |
T |
|
| Q |
219 |
ctaatgcctttaggttctcgccttttcctgatggtatgtttcactctgaaagtaaaacttcgaagagtcgcggactgcgtgctctttcagatttttccac |
318 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5914211 |
ctaatgccgttaggttctcgccttttcctgatggtatgtttcactctgaaagtaaaacttcgaagagtcgcggactgcgtgctctttcagatttttccac |
5914310 |
T |
|
| Q |
319 |
ttgtcgatgatgtccat |
335 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
5914311 |
ttgtcgatgaagtccat |
5914327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University