View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13507_low_12 (Length: 331)
Name: NF13507_low_12
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 3 - 314
Target Start/End: Complemental strand, 39304821 - 39304510
Alignment:
| Q |
3 |
atgttgatgttgatgttgatgtagcctttgttcagatctttgttgttttggaacattaactttctcaccttcaatatctctatatttttgaaggtaacat |
102 |
Q |
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| T |
39304821 |
atgttgatgttgatgttgatgtagcctttgttcagatctttgttgttttggaacattaactttctcaccttcaatatctctatatttttgaaggtaacat |
39304722 |
T |
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| Q |
103 |
tttaatggttccacatattcttcaaagcctaacgttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatccg |
202 |
Q |
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| T |
39304721 |
tttaatggttccacatattcttcaaagcctaacgttgtaatagcccaaataatatcatcaccgttgattgtctttcttttttctctttgacatttatccg |
39304622 |
T |
|
| Q |
203 |
atgcttccccggtgacaaaacttatgaactccgacacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaataactttttt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304621 |
atgcttccccggtgacaaaacttatgaactccgacacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaataactttttt |
39304522 |
T |
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| Q |
303 |
cattattctacc |
314 |
Q |
| |
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|||||||||||| |
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| T |
39304521 |
cattattctacc |
39304510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 136 - 292
Target Start/End: Complemental strand, 38281774 - 38281618
Alignment:
| Q |
136 |
gttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaaaacttatgaactccg |
235 |
Q |
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| T |
38281774 |
gttgtcatagcccaaagaagatcatcaccattaattgttttccttttttctctctgacacttatcagaagcttcaccagtaatgaaactaatgaactcag |
38281675 |
T |
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| Q |
236 |
acacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaa |
292 |
Q |
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| T |
38281674 |
agacacattcttgaaccgtttcttttgcttcttttgagattttagcatttgctggaa |
38281618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 41866750 - 41866626
Alignment:
| Q |
121 |
tcttcaaagcctaacgttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaa |
220 |
Q |
| |
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|||||||| |||||||| || || ||||||| | ||| || || ||||| ||||||| ||| ||||| ||||| ||||| || ||||| ||||||| | |
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| T |
41866750 |
tcttcaaatcctaacgtagtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatga |
41866651 |
T |
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| Q |
221 |
aacttatgaactccgacacacattc |
245 |
Q |
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| || ||||||||||| |||||||| |
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| T |
41866650 |
agctgatgaactccgatacacattc |
41866626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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