View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13507_low_13 (Length: 299)
Name: NF13507_low_13
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 72 - 280
Target Start/End: Original strand, 30413150 - 30413358
Alignment:
| Q |
72 |
atagaaaagattgtgagatcattggaaccacttcagaattctaatgacacaattagtggtgtggagagctcttaatctcaacatcaaacaaccatcaaag |
171 |
Q |
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| T |
30413150 |
atagaaaagattgtgagatcattggaaccacttcagaattctaatgacccaattagtggtgtggagagctcttaatctcaacatcaaacaaccatcaaag |
30413249 |
T |
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| Q |
172 |
tataaagggtcatatatcaagcattagtggtttagaacaacattgaaaaagagccaaatgtatctttaagtgaagaaataaatgaaatgtcataatagca |
271 |
Q |
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| T |
30413250 |
tataaagggtcatatatcaagcattagtggtttagaacaacattgaaaaagagccaaatgtatctttaagtgaagaaataaatgaaatgtcataatagca |
30413349 |
T |
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| Q |
272 |
acttcaatg |
280 |
Q |
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| T |
30413350 |
acttcaatg |
30413358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 30412269 - 30412408
Alignment:
| Q |
12 |
atgaaagtagctcacattgtgattcaatgtctgtcggaaagaccaaaatatagaccaagcatagaaaagattgtgagatcattggaaccacttcagaatt |
111 |
Q |
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| T |
30412269 |
atgaaattagctcatattataattcaatgtctgtctgaaaaaccagaatatagaccaaaaatacaagagattgtgagatcactggagcaacttcagcatt |
30412368 |
T |
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| Q |
112 |
ctaatgacacaattagtggtgtggagagctcttaatctca |
151 |
Q |
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| T |
30412369 |
ccgatgacacagtaggtggagtacggagctcttaatctca |
30412408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 30423426 - 30423531
Alignment:
| Q |
15 |
aaagtagctcacattgtgattcaatgtctgtcggaaagaccaaaatatagaccaagcatagaaaagattgtgagatcattggaaccacttcagaattcta |
114 |
Q |
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| T |
30423426 |
aaagtagctcatgttgcaattcgatgtctgtcggcagaacaaaaatatagaccaaacattgacgaggtggtgagatcgttggaacaacttcaggattcca |
30423525 |
T |
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| Q |
115 |
atgaca |
120 |
Q |
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| T |
30423526 |
atgaca |
30423531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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