View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13507_low_15 (Length: 230)
Name: NF13507_low_15
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 7373931 - 7374146
Alignment:
| Q |
1 |
ctctctccaaattgcataccccatttattttaacgaatgaaaaggatcttaacccattcattttaaatggcaatctctatttatttttacaaatgaagaa |
100 |
Q |
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| T |
7373931 |
ctctctccaaattgcatatcccatttattttaaccaacgaagaggatcttaacccat--attttaaatggcaatctccatttatttttacaaatgaagaa |
7374028 |
T |
|
| Q |
101 |
tatcttaattctcgcccccgttatcagatcttgataataaacacatggaaaataaaactagatggacccactcacaccacgtaagccagcggttaattca |
200 |
Q |
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| T |
7374029 |
gatcttaattctcgcccgctttatcggagcttgatagtaaacacatggaaaataaaactagatggacccactcacaccacgtaagccagcagttaatcca |
7374128 |
T |
|
| Q |
201 |
atcattcttcttttctat |
218 |
Q |
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||||||||||| |||||| |
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| T |
7374129 |
atcattcttctcttctat |
7374146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 128599 - 128651
Alignment:
| Q |
1 |
ctctctccaaattgcataccccatttattttaacgaatgaaaaggatcttaac |
53 |
Q |
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|||||||||||||| || | |||||||||||||| |||||| | ||||||||| |
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| T |
128599 |
ctctctccaaattgtattctccatttattttaacaaatgaagaagatcttaac |
128651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31653099 - 31653155
Alignment:
| Q |
1 |
ctctctccaaattgcataccccatttattttaacgaatgaaaaggatcttaacccat |
57 |
Q |
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| T |
31653099 |
ctctctccaaattgcatacgccatttattataccaaatggataggatctttacccat |
31653155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30235465 - 30235425
Alignment:
| Q |
1 |
ctctctccaaattgcataccccatttattttaacgaatgaa |
41 |
Q |
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|||||| |||||||||||| |||||||||||||| |||||| |
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| T |
30235465 |
ctctcttcaaattgcatactccatttattttaacaaatgaa |
30235425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 37335767 - 37335731
Alignment:
| Q |
61 |
ttttaaatggcaatctctatttatttttacaaatgaa |
97 |
Q |
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||||||||| ||||||||||||||||||| ||||||| |
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| T |
37335767 |
ttttaaatgacaatctctatttatttttataaatgaa |
37335731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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