View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13507_low_16 (Length: 226)
Name: NF13507_low_16
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14520569 - 14520789
Alignment:
| Q |
1 |
ccctgacatccacctagccctaccattaacatcggtacttttcttcgacaatatctgtttatcttcctctaaaccaaacatgttcaaattcttttgtgaa |
100 |
Q |
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| T |
14520569 |
ccctgacatccacctagccctaccattaacatcggtacttttcttcgacaataactgtttatcttcctctaaaccaaacatgttcaaattcttttgtgaa |
14520668 |
T |
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| Q |
101 |
ggaaaaattgaaactgtctcaagatcacaaacataagaatcaatcaaatcaacagaaaaaaggtccataggatcccaatccacacgagcatcatcatcgg |
200 |
Q |
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| T |
14520669 |
ggaaaaattgaaactttctcaagatcacaaacataagaatcaatcaaatcaacagaaaaaaggtccataggatcccaatccacacgagcatcatcatcgg |
14520768 |
T |
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| Q |
201 |
aatcaccagaagaaggataat |
221 |
Q |
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| T |
14520769 |
aatcaccagaagaaggataat |
14520789 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 11576127 - 11576178
Alignment:
| Q |
60 |
tatcttcctctaaaccaaacatgttcaaattcttttgtgaaggaaaaattga |
111 |
Q |
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| T |
11576127 |
tatcttcctttaaatcaatcatgttcaaattcttctgtgaagtaaaaattga |
11576178 |
T |
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