View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13507_low_17 (Length: 201)

Name: NF13507_low_17
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13507_low_17
NF13507_low_17
[»] chr2 (4 HSPs)
chr2 (83-172)||(5582337-5582426)
chr2 (88-167)||(5576212-5576290)
chr2 (18-64)||(5582442-5582488)
chr2 (86-127)||(5586666-5586706)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 5582426 - 5582337
Alignment:
Q  83 ggaaaatcaaagagccttcttcatttctttgattgttcatctttatctgcaattagtttttagtagaggactagaatatttttgttacac 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5582426 ggaaaatcaaagagccttcttcatttctttgattgttcatctttatctgcaattagtttttagtagaggactagaatatttttgttacac 5582337  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 5576290 - 5576212
Alignment:
Q  88 atcaaagagccttcttcatttctttgattgttcatctttatctgcaattagtttttagtagaggactagaatatttttgt 167  Q
    ||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||| |||| |  |||||||||    
T  5576290 atcaaagagcctt-ttcatttatttgattgttcatcattatcttcaattagttattagtagatgacttgtgtatttttgt 5576212  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 5582488 - 5582442
Alignment:
Q  18 gagacgagcatgactgtggtataaataaaattataaaccaaagagtc 64  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  5582488 gagacaagcatgactatggcataaataaaattataaaccaaagagtc 5582442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 5586706 - 5586666
Alignment:
Q  86 aaatcaaagagccttcttcatttctttgattgttcatcttta 127  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  5586706 aaatcaaagagcctt-ttcatttctttgattgttcatcttta 5586666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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