View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13507_low_2 (Length: 654)
Name: NF13507_low_2
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 27305329 - 27305815
Alignment:
| Q |
1 |
acttgttcaagaaaactttgtacattaaggaacttgatcaaatttggtaaactgattatatagtttattgcttcaccgaaataatttgttggttgatctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27305329 |
acttgttcaagaaaactttgtacattaaggaacttgatcaaatttggtaaactaattatgtagtttattgcttcaccgaaataatttgttggttgatcta |
27305428 |
T |
|
| Q |
101 |
ccgttgggtgggccgtcgtttcaattggtatcgcggtgatgagttattctataagtcgtttggatagattcttgttgtcataagattggtgtttgacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
27305429 |
ccgttgggtgggccgtcgtttcaattggtatcacggtaatgagttattctataagtcgtttggatagattcttgttgttataagattggtgtttgacatg |
27305528 |
T |
|
| Q |
201 |
gtcaaactgtattcaggtggtacacattagagggttgacggaccacctcctgattacattatccgttgatgaggagaattgggaccctagaccatctcga |
300 |
Q |
| |
|
| ||||||||||||| |||| |||||||||||||||| | |||||| ||||||||| |||| ||||||||||||||||||| || |||| |||||| | |
|
|
| T |
27305529 |
gccaaactgtattcaagtggcacacattagagggttgtcagaccactgcctgattacgttattcgttgatgaggagaattggagccttaga-catctcaa |
27305627 |
T |
|
| Q |
301 |
atgttgaaatgttgggccgatgttccggagtattaacaatttgttcaggagaaatgggattcttttcaagttgatcggtggggtggatttgttctaaatg |
400 |
Q |
| |
|
|||||||||| |||||||||||||| || |||| |||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||| ||| | |
|
|
| T |
27305628 |
atgttgaaatattgggccgatgttctggggtataaacaatttgttcgggagaaatgggattcttt----gttgatgggtggagtggatttgtttcaaaag |
27305723 |
T |
|
| Q |
401 |
aaaaactcaaactcattaaattggcacttaaggattagcatcaaattaaaatcacactcaaaatttatcgggaagaatttaattggttaagg |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27305724 |
aaaaactcaaactcattaaattggcacttaaggattagaatcaaattaaaatcacactcaaaatttatcgggaagaattaaattggttaagg |
27305815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 517 - 639
Target Start/End: Original strand, 27305812 - 27305936
Alignment:
| Q |
517 |
aaggggagaatgctttgcttctagaggctgaagtggacgaattgcatgttcttactgctgatttgtatttgttgtcaaga--gtgaatactaatatttgt |
614 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| | |||||||||||| | ||||||| |||||||||| ||||||| |
|
|
| T |
27305812 |
aaggggagaatgatttgcttctagaggccgaagtgggggaattgcatgttcttacggttgatttgtatttatcgtcaagagtgtgaatactagtatttgt |
27305911 |
T |
|
| Q |
615 |
tggcaacagtcaatgctgaatttat |
639 |
Q |
| |
|
|||||||||| || ||||||||||| |
|
|
| T |
27305912 |
tggcaacagttaaagctgaatttat |
27305936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University