View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13507_low_3 (Length: 589)
Name: NF13507_low_3
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 334 - 573
Target Start/End: Complemental strand, 43221794 - 43221555
Alignment:
| Q |
334 |
ctcacaacaacattgacagaactacttccagagccagcatcaacaactcgttcgttgatcactgcttccatttgaacaacacacgttacagtgaagatga |
433 |
Q |
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| T |
43221794 |
ctcacaacaacattgacagaactacttccagagccagcatcaacaactcgttcgttgatcactgcttccatttgaacaacacacgttacagtgaagatga |
43221695 |
T |
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| Q |
434 |
aaaagacaaagagaatcagtgttggctttgagagtctcattttattgtacctgctcagaaattaactttaaaacatgtaaggtgttatgtttttgaatga |
533 |
Q |
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| T |
43221694 |
aaaagacaaagagaatcagtgttggctttgagagtctcattttattgtacctgctcagaaattaactttaaaacatgtaaggtgttatgtttttgaatga |
43221595 |
T |
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| Q |
534 |
tctttaacaaaccaagtataaataataagatatgataaat |
573 |
Q |
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| T |
43221594 |
tctttaacaaaccaagtataaataataagatatgataaat |
43221555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 43222122 - 43221862
Alignment:
| Q |
11 |
acatcatcattcagtagaggaa-----atagtaaggaataaattacttcataatacatgcaagcagtgtgtttgatctagggtaacactgagttggtgta |
105 |
Q |
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| T |
43222122 |
acatcatcattcagtagaggaattgaaatagtaaggaataaattacttcataatacatgcaagcagtgtgtttcatctagggtaacactgagttggtgta |
43222023 |
T |
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| Q |
106 |
gatatagtcttcactctccaaatcgttatcttcattaccaccatttacttgcttgcactcaacgccttgtttttcacattcacctcttctctgcatagta |
205 |
Q |
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| T |
43222022 |
gatatagtcttcactctccaaatcgttatcttcattaccaccatttacttgcttgcactcaacgccttgtttttcacattcacctcttctctgcatagta |
43221923 |
T |
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| Q |
206 |
aaataaccagttactctaaaaaataattgagctgctaacctaaatagggcacaagcagaaa |
266 |
Q |
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| T |
43221922 |
aaataaccagttactctaaaaaataattgagctgctaacctaaatagggcacaggcagaaa |
43221862 |
T |
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