View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13507_low_4 (Length: 566)
Name: NF13507_low_4
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 164 - 550
Target Start/End: Original strand, 4674141 - 4674527
Alignment:
| Q |
164 |
caaagcccaaaggagggccaaacactattataatgttcatacatgaagaaacactagtacaagtcaaccttcttttagaattaacaattgtcgtaagata |
263 |
Q |
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| T |
4674141 |
caaagcccaaaggagggccaaacactattataatgttcatacatgaagaaacactagtacaagtcaaccatcttttagaattaacaattgtcgtaagata |
4674240 |
T |
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| Q |
264 |
taatttttctaaaatgatttagacacgcaatagcacaaaatgacacctcaaactttaaagagaatgataacaatgaataagaataaattctcaattatat |
363 |
Q |
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| T |
4674241 |
taatttttctaaaatgatttagacacgcaatagcacaaaatgacacctcaaactttaaagagaatgataacaatgaataagaataaattctcaattatat |
4674340 |
T |
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| Q |
364 |
caataattaattaaaattcgtcatcctcatgatccataagcttccatgaaccatctaattgttgaaccatacccttattctctacaaccctccatgacac |
463 |
Q |
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| T |
4674341 |
caagaattaattaaaattcgtcatcctcatgatctataagcttccatgaaccatctaattgttgaaccatacccttattctctacaaccctccatgacac |
4674440 |
T |
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| Q |
464 |
tggcacaaggtattcatcttttaaaccatccaatgttttattcacaagtgcaatatcacgattaacctcaagtttgaacactctttt |
550 |
Q |
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| T |
4674441 |
tggcacaaggtattcatcttttaaaccatccaatgttttattcacaagtgcaatatcacgattaacctcaagtttgaacactctttt |
4674527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 4674009 - 4674099
Alignment:
| Q |
28 |
taattttaaacccgatnnnnnnntctttaaacctggaaaatgcaaacaatcagaaaattactcatcaaaattgagaattgattcctctacg |
118 |
Q |
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| T |
4674009 |
taattttaaacccgataaaaaaatctttaaacctagaaaatgcaaacaatcagaaaattactcatcaaaattgagaattgattcctctacg |
4674099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4673565 - 4673600
Alignment:
| Q |
1 |
acaccatcatcgcagcaacaacaactttaattttaa |
36 |
Q |
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| T |
4673565 |
acaccatcatcgcagcaacaacaactttaattttaa |
4673600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 34556260 - 34556322
Alignment:
| Q |
395 |
atccataagcttccatgaaccatctaattgttgaaccatacccttattctctacaaccctcca |
457 |
Q |
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| T |
34556260 |
atccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctcca |
34556322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 34547767 - 34547829
Alignment:
| Q |
395 |
atccataagcttccatgaaccatctaattgttgaaccatacccttattctctacaaccctcca |
457 |
Q |
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|||||| | |||||| | |||||| ||||||||||||||||||||||||| || |||||||| |
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| T |
34547767 |
atccattaacttccaagtaccatcagattgttgaaccatacccttattctcaactaccctcca |
34547829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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