View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13507_low_5 (Length: 454)
Name: NF13507_low_5
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 436
Target Start/End: Complemental strand, 37897339 - 37896915
Alignment:
| Q |
12 |
catcatcaacaacaacaacttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctca |
111 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37897339 |
catcatctacagcaacaatttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctca |
37897240 |
T |
|
| Q |
112 |
ttcaacaactcatttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctcatctct |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37897239 |
ttcaacaactcatttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctaatctct |
37897140 |
T |
|
| Q |
212 |
ccaccaccaccccacaaaccctttatcctctacactcaaaaagattctgtcacctttaccatcatcgaaacctcggcgaatttcaaccatctttcagcca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37897139 |
ccaccaccaccccacaaaccctttatcctctacactcaaaaagattctgtcacctttaccgtcatcgaaacctcggcgaatttcaaccatctttcagcca |
37897040 |
T |
|
| Q |
312 |
atcaccatcccaaaaatctgaaagactataatcaccttgttccaaagttaacacacaaaacaacctatgatgataatgacattgaaaataacacattcat |
411 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37897039 |
atcaccatcccaaaaatcttaaagactataatcatcttgttccaaagttaacacacaaaacaacctatgatgataatgacattgaaaataacacattcat |
37896940 |
T |
|
| Q |
412 |
tttccctttgttggctttgcaagct |
436 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37896939 |
tttccctttgttggctttgcaagct |
37896915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 37957858 - 37958275
Alignment:
| Q |
19 |
aacaacaacaacttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
37957858 |
aacaacaacaacttctcttcctctcacattccttgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttccacattcaaca |
37957957 |
T |
|
| Q |
119 |
actcatttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctcatctctccaccac |
218 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||| |
|
|
| T |
37957958 |
acccatttttgtaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctctagctggaaatcttcaatgtcctccac |
37958057 |
T |
|
| Q |
219 |
caccccacaaaccctttatcctctacactcaaaaagattctgtcacctttaccatcatcgaaacctcggcgaatttcaaccatctttcagccaatcacca |
318 |
Q |
| |
|
|||||||||||| ||||| || | ||||||||| || |||||| | ||||||||| ||||| ||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
37958058 |
aaccccacaaaccttttattctttgcactcaaaatgactctgtcgcttttaccatcgtcgaatcctcggcagatttcaaccatctatcaaccaatcacca |
37958157 |
T |
|
| Q |
319 |
tcccaaaaatctgaaagactataatcaccttgttccaaagttaacacacaaaacaacctatgatgataatgacattgaaaataacacattcattttccct |
418 |
Q |
| |
|
||||||||||| |||||||||||| | ||| |||||| |||| | ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
37958158 |
ccccaaaaatcttaaagactataattatcttagtccaaaattaagccgcaaaacaacctatgatggtaatgacattgagaataacacattcattttccct |
37958257 |
T |
|
| Q |
419 |
ttgttggctttgcaagct |
436 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
37958258 |
ttgttgtctttgcaagct |
37958275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 37952123 - 37952489
Alignment:
| Q |
19 |
aacaacaacaacttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaaca |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||| || |||||| |||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
37952123 |
aacaacaacaacttttcttcctctcacattcctcgacttgccttttgcaggtccagtctatgttgaacgcttattcttctatcactttcctcattcaaca |
37952222 |
T |
|
| Q |
119 |
actcatttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctcatctctccaccac |
218 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | || |
|
|
| T |
37952223 |
acccatttttctaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatcttcactgtcctctac |
37952322 |
T |
|
| Q |
219 |
caccccacaaaccctttatcctctacactcaaaaagattctgtcacctttaccatcatcgaaacctcggcgaatttcaaccatctttcagccaatcacca |
318 |
Q |
| |
|
||||||||||||| ||||| || | ||||||||| || || ||||| |||||| |||||||| | || || |||||||||||||| ||| |||| || || |
|
|
| T |
37952323 |
caccccacaaaccttttattctttgcactcaaaatgactccgtcacttttaccgtcatcgaatcttcagcaaatttcaaccatctctcaaccaaccaaca |
37952422 |
T |
|
| Q |
319 |
tcccaaaaatctgaaagactataatcaccttgttccaaagttaacacacaaaacaacctatgatgat |
385 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| ||||| | |||||||| | ||||||| |
|
|
| T |
37952423 |
ccccaaaaatctccaagactttaatcaccttgttccaaaactaacagaaaaaacaacatttgatgat |
37952489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 28166985 - 28166759
Alignment:
| Q |
21 |
caacaacaacttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaacaac |
120 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||||||| ||| ||||||||| |||| ||| | | ||| ||| | | ||| || ||||||| | |
|
|
| T |
28166985 |
caacaacaacttatcttcctttcacattttttgacttgcattttgctggtccagtctacattaaatgaatatttttcgacccttttgcttattcaaccaa |
28166886 |
T |
|
| Q |
121 |
tcatttttgcaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctcttgctggaaatctcatctctccaccacc |
219 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
28166885 |
ccatttttgcaaaacaacacttccttctctcaaaaaaatttctttctcttactcttcaacatttcttccctcttgctggaaatctcatttctctaccacc |
28166786 |
T |
|
| Q |
220 |
accccacaaaccctttatcctctacac |
246 |
Q |
| |
|
|| || ||||| ||||| |||||||| |
|
|
| T |
28166785 |
acgacaaaaaccgtttattctctacac |
28166759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 44905830 - 44905604
Alignment:
| Q |
21 |
caacaacaacttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaacaac |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| || ||| |||| |||| |||| |||| | || ||||||| | | ||| || ||| ||| | |
|
|
| T |
44905830 |
caacaacaacttatcttcctctcacattttttgactagcattttgctgatccagtctacgttaaatgcatattcttcgacccttttgcttatttaaccaa |
44905731 |
T |
|
| Q |
121 |
tcatttttgcaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctcttgctggaaatctcatctctccaccacc |
219 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
44905730 |
ccatttttgcaaaacaacacttccatcgctcaaaaaaatctctttctcttactcttcaacatttcttccctcttgccggaaatctcatttctctaccacc |
44905631 |
T |
|
| Q |
220 |
accccacaaaccctttatcctctacac |
246 |
Q |
| |
|
| || ||||| ||||| |||||||| |
|
|
| T |
44905630 |
ctcacaaaaaccgtttattctctacac |
44905604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 434
Target Start/End: Complemental strand, 44905573 - 44905482
Alignment:
| Q |
340 |
taatcaccttgttccaaagttaacacacaaaacaacctatgatgataatgacattgaaaataacacattcattttccctttgttggctttgcaag |
434 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | | |||||||| ||||||||||| |||||||||| | || ||||| |||||||||| |
|
|
| T |
44905573 |
taatcaccttgttccaaaattaacacacaaaaacaagtttgatgata---acattgaaaatgacacattcatccttccattgttagctttgcaag |
44905482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 434
Target Start/End: Complemental strand, 28166728 - 28166637
Alignment:
| Q |
340 |
taatcaccttgttccaaagttaacacacaaaacaacctatgatgataatgacattgaaaataacacattcattttccctttgttggctttgcaag |
434 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| | | |||||||| ||||||||||| |||||||||| | || ||||| |||||||||| |
|
|
| T |
28166728 |
taatcaccttgttccaaaattaacacgcaaaaataagtttgatgata---acattgaaaatgacacattcatccttccattgttagctttgcaag |
28166637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 22 - 434
Target Start/End: Complemental strand, 11528744 - 11528332
Alignment:
| Q |
22 |
aacaacaacttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaacaact |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||| || |||||| |||| |||| ||||| ||||||||||| ||| || ||||||| | |
|
|
| T |
11528744 |
aacaacaacttctcttcctctcacattcctcgacttgcattttgcaggtccagtctacgttaaacgcctattcttctatccttttgcttattcaaccaac |
11528645 |
T |
|
| Q |
122 |
catttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctcatctctccaccaccac |
221 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11528644 |
catttttgcaaaacaacactaccatctctcaaaaaatctctttctcttactcttcaacatttcttccctcttgctggaaatctcatttctccaccaccac |
11528545 |
T |
|
| Q |
222 |
cccacaaaccctttatcctctacactcaaaaagattctgtcacctttaccatcatcgaaacctcggcgaatttcaaccatctttcagccaatcaccatcc |
321 |
Q |
| |
|
| || ||||| ||||| |||||||| || |||| |||||| ||||||||||||||||| |||| || ||||||||||||| || |||| || | | |
|
|
| T |
11528544 |
cacaaaaaccttttattctctacaccgaagaagactctgtcgcctttaccatcatcgaatcctcagcagatttcaaccatctctcgaccaaacaacccct |
11528445 |
T |
|
| Q |
322 |
caaaaatctgaaagactataatcaccttgttccaaagttaacacacaaaacaacctatgatgataatgacattgaaaataacacattcattttccctttg |
421 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||| |||||| | | |||||||||| ||||||||||| ||||||||||| | || ||| |
|
|
| T |
11528444 |
gaaaaatctcaaagaaactaatcaccttgttccaacattaacaaacaaaaacaagtttgatgataataacattgaaaatgacacattcattcttccattg |
11528345 |
T |
|
| Q |
422 |
ttggctttgcaag |
434 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11528344 |
ttggctttgcaag |
11528332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 21 - 434
Target Start/End: Complemental strand, 39713137 - 39712721
Alignment:
| Q |
21 |
caacaacaacttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaacaac |
120 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||||||| ||| |||||||||||||| | || |||| ||||||||||| ||||||||||| || | |
|
|
| T |
39713137 |
caacaactacttatcttcctctcacatttcttgacttgcattttgctggtccaatctacgctaaacgcttattcttctatccttttcctcattctaccaa |
39713038 |
T |
|
| Q |
121 |
tcatttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctcatctctccaccacca |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39713037 |
ccatttttgcaaaacaacacttccatctctcaaacagtctctttcatgtgctcttcaacattttttccctcttgctggaaatctcatttctccaccacca |
39712938 |
T |
|
| Q |
221 |
ccccacaaaccctttatcctctacactcaaaaagattctgtcacctttaccatcatcgaaacctcggcgaatttcaaccatctttcagccaatcaccatc |
320 |
Q |
| |
|
|| || ||||| ||||| | || ||| || |||| || ||| ||| |||||| | ||| ||||| | ||||||||||||| ||| ||| ||||| | |
|
|
| T |
39712937 |
ccacaaaaaccttttattcgctgcaccgaagaagactccgtcttcttcaccatcgttgaatcctcgtcagatttcaaccatctctcaaacaaacaccacc |
39712838 |
T |
|
| Q |
321 |
ccaaaaatctgaaagactataatcaccttgttccaaagttaacacacaaaacaacctatgatga---taatgacattgaaaataacacattcattttccc |
417 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||||| |||||||||||||| | ||| || |||||||||||||||| ||||||||| | | || |
|
|
| T |
39712837 |
tgaaaaatctcaaagaaaataatcaccttgctccaatattaacacacaaaactagggttgaagatattaatgacattgaaaatgacacattcactcttcc |
39712738 |
T |
|
| Q |
418 |
tttgttggctttgcaag |
434 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39712737 |
attgttggctttgcaag |
39712721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 3149633 - 3149757
Alignment:
| Q |
122 |
catttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctcatctctccaccaccac |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
3149633 |
catttttgcaaaacaacacttccatctctcgaaaaatctctttctcttactcttcaacatttcttccctcttgctggaaatctcatttctctactaccac |
3149732 |
T |
|
| Q |
222 |
cccacaaaccctttatcctctacac |
246 |
Q |
| |
|
|| ||||| ||||| |||||||| |
|
|
| T |
3149733 |
gacaaaaaccatttattctctacac |
3149757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 24549693 - 24549733
Alignment:
| Q |
165 |
ctcttactcttcaacatttcttccctcttgctggaaatctc |
205 |
Q |
| |
|
||||| |||||||| ||||||||||||||| |||||||||| |
|
|
| T |
24549693 |
ctctttctcttcaatatttcttccctcttgttggaaatctc |
24549733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 34539449 - 34539249
Alignment:
| Q |
19 |
aacaacaacaacttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaaca |
118 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||||||||| ||| |||||||||||||| ||| | || ||||||| | | ||| || ||||||| |
|
|
| T |
34539449 |
aacaacaacaacttatcttcctctcatattttttgacttgcattttgctggtccaatctacattaaatgcatattcttcgacccttttgcttattcaacc |
34539350 |
T |
|
| Q |
119 |
actcatttttgcaaaacaacacttccatctctcaaacactctctttctcttactcttcaacatttcttccctcttgctggaaatctcatctctccaccac |
218 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
34539349 |
aaccattttcgcaaaacaacacttccatctctcaaaaaatctctttctcttactcttcaacatttcttccctcttgccggaaatctcatttctctaccac |
34539250 |
T |
|
| Q |
219 |
c |
219 |
Q |
| |
|
| |
|
|
| T |
34539249 |
c |
34539249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 11148747 - 11148973
Alignment:
| Q |
21 |
caacaacaacttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaacaac |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| ||| | ||||||| |||| |||| | || ||||||| | | ||| || ||||||| | |
|
|
| T |
11148747 |
caacaacaacttatcttcctctcacattttttgacttgcattttgttggtccagtctacgttaaatgcatattcttcgacccttttacttattcaaccaa |
11148846 |
T |
|
| Q |
121 |
tcatttttgcaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctcttgctggaaatctcatctctccaccacc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||| |
|
|
| T |
11148847 |
ccatttttgcaaaacaacacttccatctctcaaaaaaatctctttctcttactgttcaacatttcttcccttttgctggaaatctcatttctctaccacc |
11148946 |
T |
|
| Q |
220 |
accccacaaaccctttatcctctacac |
246 |
Q |
| |
|
|| || ||| | ||||| |||||||| |
|
|
| T |
11148947 |
acgacaaaaatcgtttattctctacac |
11148973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 434
Target Start/End: Complemental strand, 34539191 - 34539100
Alignment:
| Q |
340 |
taatcaccttgttccaaagttaacacacaaaacaacctatgatgataatgacattgaaaataacacattcattttccctttgttggctttgcaag |
434 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | | |||||||| ||||||||||| |||||||||| | || ||||| |||||||||| |
|
|
| T |
34539191 |
taatcaccttgttccaaaattaacacacaaaaacaagtttgatgata---acattgaaaatgacacattcatccttccattgttagctttgcaag |
34539100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 38757968 - 38757779
Alignment:
| Q |
19 |
aacaacaacaacttctcttcctctcacattccttgacttgcctttagctggtccaatctatgttagacgccaattcttctatcactttcctcattcaaca |
118 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||| ||||| ||| | ||||||| |||| |||| | || ||||||| | | ||| || ||||||| |
|
|
| T |
38757968 |
aacaacaacaacttatcttcctctaacattttttgccttgcattttgttggtccagtctacgttaaatgcatattcttcgacccttttgcttattcaacc |
38757869 |
T |
|
| Q |
119 |
actcatttttgcaaaacaacacttccatctctcaaacac-tctctttctcttactcttcaacatttcttccctcttgctggaaatctcat |
207 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38757868 |
aaccatttttgcaaaacaacacttccatctctcaaaaaaatctctttctcttactcttcaacatttcttccctcttgccggaaatctcat |
38757779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 434
Target Start/End: Complemental strand, 38757709 - 38757618
Alignment:
| Q |
340 |
taatcaccttgttccaaagttaacacacaaaacaacctatgatgataatgacattgaaaataacacattcattttccctttgttggctttgcaag |
434 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | | |||||||| ||||||||||| |||||||||| | || ||||| |||||||||| |
|
|
| T |
38757709 |
taatcaccttgttccaaaattaacacacaaaaacaagtttgatgata---acattgaaaatgacacattcatccttccattgttagctttgcaag |
38757618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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