View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13507_low_9 (Length: 399)
Name: NF13507_low_9
Description: NF13507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13507_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 40432054 - 40432436
Alignment:
| Q |
1 |
gatatgattcatgttggtgatttgagtaaataaagtgttactatcatgcctttttacagtctgatggtacaagaaaagataaggccaacataagggttca |
100 |
Q |
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| T |
40432054 |
gatatgattcatgttggtgatttgagtaaataaagtgttactatcatgcctttttacagtctgatggtacaagaaaagataaggccaacataagggttca |
40432153 |
T |
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| Q |
101 |
tataccagtgagtgagaacgtctatggtggaatgaccaaggctgaagtcacggaagctcaagaaaaagaacgccaattaatgcagcaggatataacaatg |
200 |
Q |
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| T |
40432154 |
tataccagtgagtgagaacgtctatggtggaatgaccaaggctgaagtcacggaagctcaagaaaaagaacgccaattaatgcagcaggatataacaatg |
40432253 |
T |
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| Q |
201 |
gagttaacaaaagacaagaggaactctttggagtcttacgtatacgacgtgaggaataaggtatagattcaatatcttaataagatgcagacatggtttt |
300 |
Q |
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| T |
40432254 |
gagttaacaaaagacaagaggaactctttggagtcttacgtatacgacgtgaggaataaggtatagattcaatatcttaataagatgcagacatggtttt |
40432353 |
T |
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| Q |
301 |
tgtgactagataatttctgctgtcacacatttcatatctagctttgatttttgctatggtaatatgaaagtattgaatgtttc |
383 |
Q |
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| T |
40432354 |
tgtgactagataatttctgctgtcacacatttcatatctagctttgatttttgctatggtaatatgaaagtattgaatgtttc |
40432436 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 20261773 - 20261838
Alignment:
| Q |
71 |
aagaaaagataaggccaacataagggttcatataccagtgagtgagaacgtctatggtggaatgac |
136 |
Q |
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| T |
20261773 |
aagaaaagataaggcaaacagaaggattcctattgcagtgaatgagaatatctatggtggaatgac |
20261838 |
T |
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