View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13508_high_2 (Length: 514)

Name: NF13508_high_2
Description: NF13508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13508_high_2
NF13508_high_2
[»] chr1 (14 HSPs)
chr1 (253-478)||(15905883-15906115)
chr1 (67-211)||(15905720-15905847)
chr1 (257-349)||(20355138-20355232)
chr1 (257-349)||(20555674-20555768)
chr1 (257-323)||(13411447-13411514)
chr1 (142-182)||(13411607-13411647)
chr1 (142-182)||(20355327-20355367)
chr1 (142-182)||(20555539-20555579)
chr1 (152-182)||(13500161-13500191)
chr1 (255-346)||(20358555-20358649)
chr1 (70-122)||(13411651-13411701)
chr1 (256-302)||(13417121-13417169)
chr1 (311-355)||(13572307-13572351)
chr1 (256-302)||(13679936-13679984)
[»] chr2 (2 HSPs)
chr2 (255-355)||(38062545-38062646)
chr2 (152-211)||(38062454-38062513)
[»] scaffold0291 (2 HSPs)
scaffold0291 (267-355)||(20538-20626)
scaffold0291 (142-181)||(20388-20427)
[»] scaffold0006 (7 HSPs)
scaffold0006 (257-353)||(283636-283733)
scaffold0006 (267-355)||(39596-39684)
scaffold0006 (368-426)||(39405-39463)
scaffold0006 (372-426)||(283421-283475)
scaffold0006 (255-355)||(159841-159945)
scaffold0006 (70-122)||(161925-161977)
scaffold0006 (142-182)||(283820-283860)
[»] scaffold0886 (3 HSPs)
scaffold0886 (267-355)||(596-684)
scaffold0886 (368-426)||(817-875)
scaffold0886 (142-181)||(441-480)
[»] scaffold0592 (2 HSPs)
scaffold0592 (130-180)||(1794-1844)
scaffold0592 (130-180)||(7998-8048)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 253 - 478
Target Start/End: Original strand, 15905883 - 15906115
Alignment:
Q  253 gtaataggaatgggaaatagcaaaaaactgaaagaaaattaataaaacaacaaatagtaagagattaattcaagaatgaaaagtgaaagacaatgagcaa 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15905883 gtaataggaatgggaaatagcaaaaaactgaaagaaaattaataaaacaaaaaatagtaagagattaattcaagaatgaaaagtgaaagacaatgagcaa 15905982  T
Q  353 agggatat--------gagctgaaaaacataataattcaattcaatcggtggagcactgttatcgtctgcaactgcaagtggtattaacccaatgaaaat 444  Q
    ||||||||        |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15905983 agggatatttggatatgagctgaaaa-cataataactcaattcaatcggtggagcactgttatcgtctgcaactgcaagtggtattaacccaataaaaat 15906081  T
Q  445 tctacaggaaaaattaattaattaattaatctag 478  Q
    ||||||||||||||||||||||||||||||||||    
T  15906082 tctacaggaaaaattaattaattaattaatctag 15906115  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 15905720 - 15905847
Alignment:
Q  67 tttaatcagaaattgcaaaattttattatctataagtgaaggaaaacaaattaatgtacctgcctctaaagtttaaccacttgtcgaagaaactccaatc 166  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||              ||   |||||||||||||||||||||||||    
T  15905720 tttaatcacaaattgcaaaattttactatctataagtgaaggaaaacaaattaatgc-------------gt---accacttgtcgaagaaactccaatc 15905803  T
Q  167 tttgaaatgaacagagaatatatttgagataactttcgttcacta 211  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  15905804 tttgaaatgaaca-agaatatatttgagataactttcgttcacta 15905847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 257 - 349
Target Start/End: Complemental strand, 20355232 - 20355138
Alignment:
Q  257 taggaatgggaaa-tagcaaaaaa-ctgaaagaaaa-ttaataaaacaacaaatagtaagagattaattcaagaatgaaaagtgaaagacaatgag 349  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  20355232 taggaatgggaaaatagcaaaaaaactgaaagaaaaattaataaaacag-aaatagtaagagattaattcaagaatgaaaagcgaaagacaatgag 20355138  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 257 - 349
Target Start/End: Original strand, 20555674 - 20555768
Alignment:
Q  257 taggaatgggaaa-tagcaaaaaa-ctgaaagaaaa-ttaataaaacaacaaatagtaagagattaattcaagaatgaaaagtgaaagacaatgag 349  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  20555674 taggaatgggaaaatagcaaaaaaactgaaagaaaaattaataaaacag-aaatagtaagagattaattcaagaatgaaaagcgaaagacaatgag 20555768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 13411514 - 13411447
Alignment:
Q  257 taggaatgggaaa-tagcaaaaaactgaaag-aaaattaataaaacaacaaatagtaagagattaattc 323  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  13411514 taggaatgggaaaatagcaaaaaactgaaagaaaaattaataaaac-agaaatagtaagagattaattc 13411447  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 13411647 - 13411607
Alignment:
Q  142 accacttgtcgaagaaactccaatctttgaaatgaacagag 182  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  13411647 accacttgttgaagaaactccaatctttgaaatgaacagag 13411607  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 20355367 - 20355327
Alignment:
Q  142 accacttgtcgaagaaactccaatctttgaaatgaacagag 182  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  20355367 accacttgttgaagaaactccaatatttgaaatgaacagag 20355327  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 20555539 - 20555579
Alignment:
Q  142 accacttgtcgaagaaactccaatctttgaaatgaacagag 182  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  20555539 accacttgttgaagaaactccaatatttgaaatgaacagag 20555579  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 182
Target Start/End: Complemental strand, 13500191 - 13500161
Alignment:
Q  152 gaagaaactccaatctttgaaatgaacagag 182  Q
    |||||||||||||||||||||||||||||||    
T  13500191 gaagaaactccaatctttgaaatgaacagag 13500161  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 20358649 - 20358555
Alignment:
Q  255 aataggaatgggaaatagcaaaaaactgaaaga-aaattaataaaa-ca-acaaatagtaagagattaattcaagaatgaaaagtgaaagacaat 346  Q
    |||| |||||| |||||||||| |||||||||| |||||||||||| || | |||||  ||||||| ||||||||||| ||| || |||||||||    
T  20358649 aataagaatggaaaatagcaaacaactgaaagacaaattaataaaaacagagaaataagaagagatcaattcaagaatcaaatgtaaaagacaat 20358555  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 13411701 - 13411651
Alignment:
Q  70 aatcagaaattgcaaaattttattatctataagtgaaggaaaacaaattaatg 122  Q
    ||||| |||||||||||||||||| |  || ||||||||||||||||||||||    
T  13411701 aatcacaaattgcaaaattttatttt--attagtgaaggaaaacaaattaatg 13411651  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 13417169 - 13417121
Alignment:
Q  256 ataggaatgggaaa-tagcaaaaaactgaaaga-aaattaataaaacaa 302  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  13417169 ataggaatgggaaaatagcaaaaaagtgaaagacaaattaataaaacaa 13417121  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 13572351 - 13572307
Alignment:
Q  311 aagagattaattcaagaatgaaaagtgaaagacaatgagcaaagg 355  Q
    ||||||| ||||||||||| ||| || ||||||||||||||||||    
T  13572351 aagagatcaattcaagaatcaaatgtaaaagacaatgagcaaagg 13572307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 13679984 - 13679936
Alignment:
Q  256 ataggaatgggaaa-tagcaaaaaactgaaaga-aaattaataaaacaa 302  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  13679984 ataggaatgggaaaatagcaaaaaagtgaaagacaaattaataaaacaa 13679936  T

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Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 38062545 - 38062646
Alignment:
Q  255 aataggaatgggaaa-tagcaaaaaactgaaagaaaa-ttaataaaacaacaaatagtaagagattaattcaagaatgaaaagtgaaagacaatgagcaa 352  Q
    ||||||||||||||| |||||||||| |||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38062545 aataggaatgggaaagtagcaaaaaagtgaaagaaaaattaataaaacag-aaatagtaagagattaattcaagaatgaaaagtgaaagacaatgagcaa 38062643  T
Q  353 agg 355  Q
    |||    
T  38062644 agg 38062646  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 38062454 - 38062513
Alignment:
Q  152 gaagaaactccaatctttgaaatgaacagagaatatatttgagataactttcgttcacta 211  Q
    |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  38062454 gaagaaactccaatatttgaaatgaacagagaatatatataagataactttcgttcacta 38062513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 20538 - 20626
Alignment:
Q  267 aaatagcaaaaaactgaaagaaaa-ttaataaaacaacaaatagtaagagattaattcaagaatgaaaagtgaaagacaatgagcaaagg 355  Q
    |||||||||||||||||||||||| |||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20538 aaatagcaaaaaactgaaagaaaaattaataaaacag-aaatagtatgagattaattcaagaatgaaaagtgaaagacaatgagcaaagg 20626  T

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Target: scaffold0291; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 20388 - 20427
Alignment:
Q  142 accacttgtcgaagaaactccaatctttgaaatgaacaga 181  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  20388 accacttgttgaagaaactctaatctttgaaatgaacaga 20427  T

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Target: scaffold0006 (Bit Score: 63; Significance: 4e-27; HSPs: 7)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 257 - 353
Target Start/End: Complemental strand, 283733 - 283636
Alignment:
Q  257 taggaatgggaaa-tagcaaaaaactgaaagaaaa-ttaataaaacaacaaatagtaagagattaattcaagaatgaaaagtgaaagacaatgagcaaa 353  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  283733 taggaatgggaaaatagcaaaaaactgaaagaaaaattaataaaactg-aaatagtaagagattaattcaagaatgaaaagcgaaagacaatgagcaaa 283636  T

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Target: scaffold0006; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 355
Target Start/End: Complemental strand, 39684 - 39596
Alignment:
Q  267 aaatagcaaaaaactgaaagaaaa-ttaataaaacaacaaatagtaagagattaattcaagaatgaaaagtgaaagacaatgagcaaagg 355  Q
    |||||||||||||||||||||||| ||||||  |||  ||||||||||||||||||||||||||||||| || |||| ||||||||||||    
T  39684 aaatagcaaaaaactgaaagaaaaattaatattacag-aaatagtaagagattaattcaagaatgaaaaatggaagataatgagcaaagg 39596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 368 - 426
Target Start/End: Complemental strand, 39463 - 39405
Alignment:
Q  368 aaaacataataattcaattcaatcggtggagcactgttatcgtctgcaactgcaagtgg 426  Q
    |||||||||||||||||| ||||| ||| || ||||||||||||||| |||||||||||    
T  39463 aaaacataataattcaatgcaatcagtgtagtactgttatcgtctgctactgcaagtgg 39405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 283475 - 283421
Alignment:
Q  372 cataataattcaattcaatcggtggagcactgttatcgtctgcaactgcaagtgg 426  Q
    |||||||||||||||||||| ||| ||  |||||||||||||| |||||||||||    
T  283475 cataataattcaattcaatcagtgtagtgctgttatcgtctgctactgcaagtgg 283421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 159945 - 159841
Alignment:
Q  255 aataggaatgggaaatagcaaaaaactgaaaga-aaattaataaaacaacaaatagtaaga---gattaattcaagaatgaaaagtgaaagacaatgagc 350  Q
    |||| |||||| |||||||||| ||||| |||| ||||||||||||  | |||||  ||||   ||| ||||||||||| ||| || |||||||||||||    
T  159945 aataagaatggaaaatagcaaacaactgcaagacaaattaataaaaacagaaataaaaagaagagatcaattcaagaatcaaatgtaaaagacaatgagc 159846  T
Q  351 aaagg 355  Q
    |||||    
T  159845 aaagg 159841  T

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Target: scaffold0006; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 161977 - 161925
Alignment:
Q  70 aatcagaaattgcaaaattttattatctataagtgaaggaaaacaaattaatg 122  Q
    ||||| |||||||||||||||| | | ||| || |||||||||||||||||||    
T  161977 aatcacaaattgcaaaattttactctatattagcgaaggaaaacaaattaatg 161925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 283860 - 283820
Alignment:
Q  142 accacttgtcgaagaaactccaatctttgaaatgaacagag 182  Q
    |||| |||| |||||||||||||| ||||||||||||||||    
T  283860 accagttgttgaagaaactccaatatttgaaatgaacagag 283820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 596 - 684
Alignment:
Q  267 aaatagcaaaaaactgaaagaaaa-ttaataaaacaacaaatagtaagagattaattcaagaatgaaaagtgaaagacaatgagcaaagg 355  Q
    |||||||||||||||||||||||| ||||||  |||  ||||||||||||||||||||||| ||||||| || |||| ||||||||||||    
T  596 aaatagcaaaaaactgaaagaaaaattaatattacag-aaatagtaagagattaattcaagtatgaaaaatggaagataatgagcaaagg 684  T

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Target: scaffold0886; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 817 - 875
Alignment:
Q  368 aaaacataataattcaattcaatcggtggagcactgttatcgtctgcaactgcaagtgg 426  Q
    |||||||||||||||||| ||||| | | || ||||||||||||||| |||||||||||    
T  817 aaaacataataattcaatgcaatcagcgtagtactgttatcgtctgctactgcaagtgg 875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 441 - 480
Alignment:
Q  142 accacttgtcgaagaaactccaatctttgaaatgaacaga 181  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  441 accacttgttgaagaaactccgatctttgaaatgaacaga 480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 1844 - 1794
Alignment:
Q  130 ctctaaagtttaaccacttgtcgaagaaactccaatctttgaaatgaacag 180  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  1844 ctctaaagtataaccacttgttgaagaaactccaatatttgaaatgaacag 1794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 8048 - 7998
Alignment:
Q  130 ctctaaagtttaaccacttgtcgaagaaactccaatctttgaaatgaacag 180  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  8048 ctctaaagtataaccacttgttgaagaaactccaatatttgaaatgaacag 7998  T

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