View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13508_low_1 (Length: 862)
Name: NF13508_low_1
Description: NF13508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13508_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 776; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 16 - 853
Target Start/End: Complemental strand, 3674796 - 3673956
Alignment:
| Q |
16 |
tcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgtaatatacagagatttcaaagcttcaaata |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674796 |
tcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgtaatatacagagatttcaaagcttcaaata |
3674697 |
T |
|
| Q |
116 |
tcttactagactcggtatgttcttttctcttccctttctgttttattcataaacttcaaagatcaccttgcatctacaaaattatcttccatgtggccat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3674696 |
tcttactagactcggtatgttcttttctcttccctttctgttttattcataaacttcaaagatcaccttgcatctacaaaattatcttccatgtggccat |
3674597 |
T |
|
| Q |
216 |
attagaaaattattaacttggacttttttatctcccatcaaatccaggattatacagctaagttatcagactttggactagctaaggatggtcctgaagg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674596 |
attagaaaattattaacttggacttttttatctcccatcaaatccaggattatacagctaagttatcagactttggactagctaaggatggtcctgaagg |
3674497 |
T |
|
| Q |
316 |
agaagagacacatgtaacgacacgcgtaatgggaacacatggttatgcggctcctgagtacatcatgacaggtatgactctaccatacaaaatgttaacc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674496 |
agaagagacacatgtaacgacacgcgtaatgggaacacatggttatgcggctcctgagtacatcatgacaggtatgactctaccatacaaaatgttaacc |
3674397 |
T |
|
| Q |
416 |
ctgttttatgctgctcctggccgaactctagattatcagggttgttttcgctgataatttgagggttaagaagaag-aannnnnnnnnnaatctaattaa |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| || ||||||||||| |
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|
| T |
3674396 |
ctgttttatgctgctcctggccgaactctagattatcaggattgttttcgctgataattttagggttaagacgaagaaaaaaaaatttgaatctaattaa |
3674297 |
T |
|
| Q |
515 |
cccttgcccgattgat--tatataggtcacctcacaacaaagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaagggtag |
612 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3674296 |
cccttgcccgattgattatatataggtcacctcacaacaaagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaagggtag |
3674197 |
T |
|
| Q |
613 |
tggataagtcttcagaatcaagtagagggaaaaacttggtggaatgggcaagaccaatgttgagagatcaaaagaagctgcaccgtattatcgaccgtag |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3674196 |
tggataagtcttcagaatcaagtagagggaaaaacttggtggaatgggcaagaccaatgttgagagatcaaaagaagctgcaccgtattatcgaccgtag |
3674097 |
T |
|
| Q |
713 |
acttgaaggtcaatatcctaccaaaggagcattgaaagttgctatgttagcttttaaatgtttgagtcatcacccaaatccaagacccttcatgagtgat |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3674096 |
acttgaaggtcaatatcctaccaaaggagctttgaaagttgctatgttagcttttaaatgtttgagtcatcacccaaatccaagacccttcatgagtgat |
3673997 |
T |
|
| Q |
813 |
gttgttaaggttttggaaccacttcaagattttgatgatgt |
853 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3673996 |
gttgttaaggttttggaaccacttcaagattttgatgatgt |
3673956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 48553578 - 48553699
Alignment:
| Q |
16 |
tcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgtaatatacagagatttcaaagcttcaaata |
115 |
Q |
| |
|
||||| || |||||||| ||||| || || ||||| || |||| || |||||||||||||||||||||||||| || || ||||||||| ||||||||| |
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|
| T |
48553578 |
tcaaccagaatgaaaattgcattaggtgcagctaagggactagctttccttcatgaagcagataaacctgtaatttatagggatttcaaaacttcaaata |
48553677 |
T |
|
| Q |
116 |
tcttactagactcggtatgttc |
137 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
48553678 |
tattactggactcggtatgttc |
48553699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 254 - 390
Target Start/End: Original strand, 48553771 - 48553910
Alignment:
| Q |
254 |
caaatccaggattatacagctaagttatcagactttggactagctaaggatggtcctgaaggagaagagacacatgt---aacgacacgcgtaatgggaa |
350 |
Q |
| |
|
||||| |||||||| |||||||| ||||||| ||||| ||||||| |||||||||||||||||||| |||||||| ||| ||| || ||||||||| |
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|
| T |
48553771 |
caaattcaggattacacagctaaactatcagatcttggattagctaaagatggtcctgaaggagaagaaacacatgtgacaacaacatgcataatgggaa |
48553870 |
T |
|
| Q |
351 |
cacatggttatgcggctcctgagtacatcatgacaggtat |
390 |
Q |
| |
|
|| | || ||||| ||||||||||| |||||| ||||||| |
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|
| T |
48553871 |
caaaaggctatgctgctcctgagtatatcatgtcaggtat |
48553910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 255 - 390
Target Start/End: Complemental strand, 44196414 - 44196276
Alignment:
| Q |
255 |
aaatccaggattatacagctaagttatcagactttggactagctaaggatggtcctgaaggagaagagacacatgt---aacgacacgcgtaatgggaac |
351 |
Q |
| |
|
|||| |||||||| ||||| || |||||||| ||||| ||||||| |||||||||||||||||||| |||||||| ||| ||| || |||||||||| |
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|
| T |
44196414 |
aaattcaggattacacagccaaactatcagaccttggattagctaaagatggtcctgaaggagaagaaacacatgtgacaacaacatgcataatgggaac |
44196315 |
T |
|
| Q |
352 |
acatggttatgcggctcctgagtacatcatgacaggtat |
390 |
Q |
| |
|
| | || ||||| ||||||||||| |||||| ||||||| |
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| T |
44196314 |
aaaaggctatgctgctcctgagtatatcatggcaggtat |
44196276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 255 - 390
Target Start/End: Original strand, 50806447 - 50806585
Alignment:
| Q |
255 |
aaatccaggattatacagctaagttatcagactttggactagctaaggatggtcctgaaggagaagagacacatgt---aacgacacgcgtaatgggaac |
351 |
Q |
| |
|
|||| |||||||| |||||||| ||| |||| ||||| ||||||| |||||||||||||||||||| |||||||| ||| ||| || | |||||||| |
|
|
| T |
50806447 |
aaattcaggattacacagctaaactattagaccttggattagctaaagatggtcctgaaggagaagaaacacatgtgacaacaacatgcatgatgggaac |
50806546 |
T |
|
| Q |
352 |
acatggttatgcggctcctgagtacatcatgacaggtat |
390 |
Q |
| |
|
| |||| ||||| ||||||||||| |||||| ||||||| |
|
|
| T |
50806547 |
aaatggctatgctgctcctgagtatatcatggcaggtat |
50806585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 255 - 390
Target Start/End: Complemental strand, 50869430 - 50869292
Alignment:
| Q |
255 |
aaatccaggattatacagctaagttatcagactttggactagctaaggatggtcctgaaggagaagagacacatgt---aacgacacgcgtaatgggaac |
351 |
Q |
| |
|
|||| |||||||| |||||||| ||| |||| ||||| ||||||| |||||||||||||||||||| |||||||| ||| ||| || | |||||||| |
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|
| T |
50869430 |
aaattcaggattacacagctaaactattagaccttggattagctaaagatggtcctgaaggagaagaaacacatgtgacaacaacatgcatgatgggaac |
50869331 |
T |
|
| Q |
352 |
acatggttatgcggctcctgagtacatcatgacaggtat |
390 |
Q |
| |
|
| |||| ||||| ||||||||||| |||||| ||||||| |
|
|
| T |
50869330 |
aaatggctatgctgctcctgagtatatcatggcaggtat |
50869292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 44196556 - 44196483
Alignment:
| Q |
64 |
cttcatgaagcagataaacctgtaatatacagagatttcaaagcttcaaatatcttactagactcggtatgttc |
137 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
44196556 |
cttcatgaagcagataaacttgtaatatatagggatttcaaaacttcaaatatattactggactcggtatgttc |
44196483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 552 - 619
Target Start/End: Original strand, 48554300 - 48554367
Alignment:
| Q |
552 |
aagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaagggtagtggataa |
619 |
Q |
| |
|
|||||||||||||||||||||||||| || | || |||||||| ||||||| |||||||||||||| |
|
|
| T |
48554300 |
aagagtgatgtgtatagctatggagtagtgttgttggaattgcttacaggaaagagggtagtggataa |
48554367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 19965817 - 19965890
Alignment:
| Q |
64 |
cttcatgaagcagataaacctgtaatatacagagatttcaaagcttcaaatatcttactagactcggtatgttc |
137 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
19965817 |
cttcatgaagcagataaacttgtaatatatagggatttcaaaaattcaaatatattactggactcggtatgttc |
19965890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 18327601 - 18327485
Alignment:
| Q |
16 |
tcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgtaatatacagagatttcaaagcttcaaata |
115 |
Q |
| |
|
|||||||| |||||||| || | |||||||| ||||| ||||| |||||||||||||| || |||| || || | |||||||||||||||||||| | |
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|
| T |
18327601 |
tcaacaagaatgaaaattgctgttggagctgcaaaaggtttagcctttcttcatgaagctgagcaaccagttatttttagagatttcaaagcttcaaaca |
18327502 |
T |
|
| Q |
116 |
tcttactagactcggta |
132 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
18327501 |
tcttgttagactcggta |
18327485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 51938785 - 51938673
Alignment:
| Q |
16 |
tcaacaaggatgaaaatcgcattgggagctgctaaaggcttagcatttcttcatgaagcagataaacctgtaatatacagagatttcaaagcttcaaata |
115 |
Q |
| |
|
|||||||| |||||||| || | |||||||| ||||| |||| ||| | ||||| ||| | ||||| || || |||||||||||||||| |||||||| |
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|
| T |
51938785 |
tcaacaagaatgaaaattgctgttggagctgcaaaaggtctagcttttttacatgatgcaaagaaaccagtcatctacagagatttcaaaggttcaaata |
51938686 |
T |
|
| Q |
116 |
tcttactagactc |
128 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
51938685 |
tcttattagactc |
51938673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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