View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13508_low_2 (Length: 782)
Name: NF13508_low_2
Description: NF13508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13508_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 18 - 773
Target Start/End: Complemental strand, 3674714 - 3673956
Alignment:
| Q |
18 |
atttcaaagcttcaaatatcttactagactcggtatgttcttttctcttccctttctgttttattcataaacttcaaagatcaccttgcatctacaaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674714 |
atttcaaagcttcaaatatcttactagactcggtatgttcttttctcttccctttctgttttattcataaacttcaaagatcaccttgcatctacaaaat |
3674615 |
T |
|
| Q |
118 |
tatcttccatgtggccatattagaaaattattaacttggacttttttatctcccatcaaatccaggattatacagctaagttatcagactttggactagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674614 |
tatcttccatgtggccatattagaaaattattaacttggacttttttatctcccatcaaatccaggattatacagctaagttatcagactttggactagc |
3674515 |
T |
|
| Q |
218 |
taaggatggtcctgaaggagaagagacacatgtaacgacacgcgtaatgggaacacatggttatgcggctcctgagtacatcatgacaggtatgactcta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674514 |
taaggatggtcctgaaggagaagagacacatgtaacgacacgcgtaatgggaacacatggttatgcggctcctgagtacatcatgacaggtatgactcta |
3674415 |
T |
|
| Q |
318 |
ccatacaaaatgttaaccctgttttatgctgctcctggccgaactctagattatcagggttgttttcgctgataatttgagggttaagaagaag-aannn |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| || |
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| T |
3674414 |
ccatacaaaatgttaaccctgttttatgctgctcctggccgaactctagattatcaggattgttttcgctgataattttagggttaagacgaagaaaaaa |
3674315 |
T |
|
| Q |
417 |
nnnnnnnaatctaattaacccttgcccgattgat--tatataggtcacctcacaacaaagagtgatgtgtatagctatggagtggttctattagaattgc |
514 |
Q |
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| T |
3674314 |
aaatttgaatctaattaacccttgcccgattgattatatataggtcacctcacaacaaagagtgatgtgtatagctatggagtggttctattagaattgc |
3674215 |
T |
|
| Q |
515 |
tcacaggaagaagggtagtggataagtcttcagaatcaagtagagggaaaaacttggtggaatgggcaagaccaatgttgagagatcaaaagaagctgca |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674214 |
tcacaggaagaagggtagtggataagtcttcagaatcaagtagagggaaaaacttggtggaatgggcaagaccaatgttgagagatcaaaagaagctgca |
3674115 |
T |
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| Q |
615 |
ccgtattatcgaccgtagacttgaaggtcaatatcctaccaaaggagcattgaaagttgctatgttagcttttaaatgtttgagtcatcacccaaatcca |
714 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674114 |
ccgtattatcgaccgtagacttgaaggtcaatatcctaccaaaggagctttgaaagttgctatgttagcttttaaatgtttgagtcatcacccaaatcca |
3674015 |
T |
|
| Q |
715 |
agacccttcatgagtgatgttgttaaggttttggaaccacttcaagattttgatgatgt |
773 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3674014 |
agacccttcatgagtgatgttgttaaggttttggaaccacttcaagattttgatgatgt |
3673956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 174 - 310
Target Start/End: Original strand, 48553771 - 48553910
Alignment:
| Q |
174 |
caaatccaggattatacagctaagttatcagactttggactagctaaggatggtcctgaaggagaagagacacatgt---aacgacacgcgtaatgggaa |
270 |
Q |
| |
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||||| |||||||| |||||||| ||||||| ||||| ||||||| |||||||||||||||||||| |||||||| ||| ||| || ||||||||| |
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| T |
48553771 |
caaattcaggattacacagctaaactatcagatcttggattagctaaagatggtcctgaaggagaagaaacacatgtgacaacaacatgcataatgggaa |
48553870 |
T |
|
| Q |
271 |
cacatggttatgcggctcctgagtacatcatgacaggtat |
310 |
Q |
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|| | || ||||| ||||||||||| |||||| ||||||| |
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| T |
48553871 |
caaaaggctatgctgctcctgagtatatcatgtcaggtat |
48553910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 44196414 - 44196276
Alignment:
| Q |
175 |
aaatccaggattatacagctaagttatcagactttggactagctaaggatggtcctgaaggagaagagacacatgt---aacgacacgcgtaatgggaac |
271 |
Q |
| |
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|||| |||||||| ||||| || |||||||| ||||| ||||||| |||||||||||||||||||| |||||||| ||| ||| || |||||||||| |
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| T |
44196414 |
aaattcaggattacacagccaaactatcagaccttggattagctaaagatggtcctgaaggagaagaaacacatgtgacaacaacatgcataatgggaac |
44196315 |
T |
|
| Q |
272 |
acatggttatgcggctcctgagtacatcatgacaggtat |
310 |
Q |
| |
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| | || ||||| ||||||||||| |||||| ||||||| |
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| T |
44196314 |
aaaaggctatgctgctcctgagtatatcatggcaggtat |
44196276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 175 - 310
Target Start/End: Original strand, 50806447 - 50806585
Alignment:
| Q |
175 |
aaatccaggattatacagctaagttatcagactttggactagctaaggatggtcctgaaggagaagagacacatgt---aacgacacgcgtaatgggaac |
271 |
Q |
| |
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|||| |||||||| |||||||| ||| |||| ||||| ||||||| |||||||||||||||||||| |||||||| ||| ||| || | |||||||| |
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| T |
50806447 |
aaattcaggattacacagctaaactattagaccttggattagctaaagatggtcctgaaggagaagaaacacatgtgacaacaacatgcatgatgggaac |
50806546 |
T |
|
| Q |
272 |
acatggttatgcggctcctgagtacatcatgacaggtat |
310 |
Q |
| |
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| |||| ||||| ||||||||||| |||||| ||||||| |
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| T |
50806547 |
aaatggctatgctgctcctgagtatatcatggcaggtat |
50806585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 50869430 - 50869292
Alignment:
| Q |
175 |
aaatccaggattatacagctaagttatcagactttggactagctaaggatggtcctgaaggagaagagacacatgt---aacgacacgcgtaatgggaac |
271 |
Q |
| |
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|||| |||||||| |||||||| ||| |||| ||||| ||||||| |||||||||||||||||||| |||||||| ||| ||| || | |||||||| |
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| T |
50869430 |
aaattcaggattacacagctaaactattagaccttggattagctaaagatggtcctgaaggagaagaaacacatgtgacaacaacatgcatgatgggaac |
50869331 |
T |
|
| Q |
272 |
acatggttatgcggctcctgagtacatcatgacaggtat |
310 |
Q |
| |
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| |||| ||||| ||||||||||| |||||| ||||||| |
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| T |
50869330 |
aaatggctatgctgctcctgagtatatcatggcaggtat |
50869292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 472 - 539
Target Start/End: Original strand, 48554300 - 48554367
Alignment:
| Q |
472 |
aagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaagggtagtggataa |
539 |
Q |
| |
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|||||||||||||||||||||||||| || | || |||||||| ||||||| |||||||||||||| |
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| T |
48554300 |
aagagtgatgtgtatagctatggagtagtgttgttggaattgcttacaggaaagagggtagtggataa |
48554367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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