View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13508_low_3 (Length: 645)
Name: NF13508_low_3
Description: NF13508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13508_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 69 - 626
Target Start/End: Complemental strand, 36935772 - 36935212
Alignment:
| Q |
69 |
aatttaggggggttaacttattcaatgacctaatgaatccccacttagccataatacatcacttacactaagaccaaggattaacac---cttgatcagg |
165 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36935772 |
aatttaggggggttaacttattcaatgacctaatgaatccccacttagccataatacatcacttacactaagaccaaggattaacacgaccttgatcagg |
36935673 |
T |
|
| Q |
166 |
tttactttcagttcgtgatgccnnnnnnngatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaagaaaaagaagcacatat |
265 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
36935672 |
tttactttcagttcgtgatgccaaaaaaagatatggataatgagaaatgtaccgcaaggggttgctagttgatggtgatggaaggaaaagaagcacatat |
36935573 |
T |
|
| Q |
266 |
aacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaacgtagttcactgataacagtgtagagaccagccatgaaag |
365 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36935572 |
aacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacattggacaaccgacgtagttcactgataacagtgtagagaccagccatgaaag |
36935473 |
T |
|
| Q |
366 |
ccaaagataatgcaatgagagcgattccaagaagtggcataacgattttgagagtaaaagtcagcaattcagttaatccaaatgttgcccaaaacagtat |
465 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
36935472 |
ccaaagataatgcaataagagcgattccaagaagcggcataacgattttgagaggtaaagtcagcaattcagttaacccaaatgttgcccaaaagagtat |
36935373 |
T |
|
| Q |
466 |
gatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacattgcatgacatagattgtgtgcttttccttctgcttca |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36935372 |
gatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacattgtatgacatagattgtgtgcttttccttctgcttca |
36935273 |
T |
|
| Q |
566 |
cctggaacggctaaacatgctgctactgaagcagtgattataagtgttgaaacaattgtaa |
626 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36935272 |
catggaacggctaaacatgctgctactgaagcagtgattataagtgttgaaacaattgtaa |
36935212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 150 - 624
Target Start/End: Complemental strand, 36956542 - 36956068
Alignment:
| Q |
150 |
taacaccttgatcaggtttactttcagttcgtgatgccnnnnnnngatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaag |
249 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||| || | || || ||||||||||||| ||| || ||||||||||||| |||| |||| |
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| T |
36956542 |
taacatcttgatcaggtttactttcagtttgtgatgccaagaaaagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaag |
36956443 |
T |
|
| Q |
250 |
aaaaagaagcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaacgtagttcactgataacagtgtag |
349 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||| |||||||| ||||||||||| |
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| T |
36956442 |
gaaaagaagcatatataaaaaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatttgccaaccaattaagttcactaataacagtgtac |
36956343 |
T |
|
| Q |
350 |
agaccagccatgaaagccaaagataatgcaatgagagcgattccaagaagtggcataacgattttgagagtaaaagtcagcaattcagttaatccaaatg |
449 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||| | ||||||||||||||||| || |
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|
| T |
36956342 |
agaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagaagcggcacaacaattttgagagtaaaagttaccaattcagttaatccaagtg |
36956243 |
T |
|
| Q |
450 |
ttgcccaaaacagtatgatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacattgcatgacatagattgtgtgc |
549 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
36956242 |
ttgcccaaaagagtatgatggtagcactaattgaactgaacaatgatattgtgatgaagataatgaaaacatggaacattgcatgacatagattgtgtgc |
36956143 |
T |
|
| Q |
550 |
ttttccttctgcttcacctggaacggctaaacatgctgctactgaagcagtgattataagtgttgaaacaattgt |
624 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
36956142 |
ttttccttctgcttcacctggaacagctaaacatgctgctactgatgctgtgattataagtgttgaaacaattgt |
36956068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 209 - 618
Target Start/End: Complemental strand, 36948407 - 36947998
Alignment:
| Q |
209 |
gaaatgtaccacaaggggttgctagttgatggtgatagaagaaaaagaagcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaa |
308 |
Q |
| |
|
|||||||||| ||| || |||||||||||| |||| |||| ||||| |||| |||||| | |||| ||||| | |||||||||| || ||||||||||| |
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| T |
36948407 |
gaaatgtaccgcaatggtatgctagttgatgatgatggaaggaaaaggagcatatataaaagaatctcaaccacaacaaaaatcaatgtcataaccagaa |
36948308 |
T |
|
| Q |
309 |
acacattggacaaccaacgtagttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaatgagagcgattccaagaagtggcataac |
408 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||||||||||| ||||| |||||||||||||| | || ||||||||||||||||||| ||||||||| |
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|
| T |
36948307 |
acacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatgagagcgattccaagaattggcataac |
36948208 |
T |
|
| Q |
409 |
gattttgagagtaaaagtcagcaattcagttaatccaaatgttgcccaaaacagtatgatggtagcactaatggaactgaacaatgatactgtgatgaag |
508 |
Q |
| |
|
||||| |||| || ||| ||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||| |||||||||| |
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| T |
36948207 |
aattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaataatgatattgtgatgaag |
36948108 |
T |
|
| Q |
509 |
ataatgaaagcatgaaacattgcatgacatagattgtgtgcttttccttctgcttcacctggaacggctaaacatgctgctactgaagcagtgattataa |
608 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||| ||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
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|
| T |
36948107 |
ataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctactgatgcagtgattataa |
36948008 |
T |
|
| Q |
609 |
gtgttgaaac |
618 |
Q |
| |
|
| |||||||| |
|
|
| T |
36948007 |
gggttgaaac |
36947998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 329 - 618
Target Start/End: Original strand, 37069672 - 37069961
Alignment:
| Q |
329 |
agttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaatgagagcgattccaagaagtggcataacgattttgagagtaaaagtca |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||||||||| |||||||| || | ||||||| |
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|
| T |
37069672 |
agttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttcagtgagaaagtca |
37069771 |
T |
|
| Q |
429 |
gcaattcagttaatccaaatgttgcccaaaacagtatgatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacat |
528 |
Q |
| |
|
||||||||||||||||| | ||||| |||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |
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|
| T |
37069772 |
ccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaaagcttggaacat |
37069871 |
T |
|
| Q |
529 |
tgcatgacatagattgtgtgcttttccttctgcttcacctggaacggctaaacatgctgctactgaagcagtgattataagtgttgaaac |
618 |
Q |
| |
|
|||||||||||| |||| ||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37069872 |
tgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagtgttgaaac |
37069961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 301 - 618
Target Start/End: Original strand, 37079404 - 37079721
Alignment:
| Q |
301 |
aaccagaaacacattggacaaccaacgtagttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaatgagagcgattccaagaagt |
400 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
37079404 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagt |
37079503 |
T |
|
| Q |
401 |
ggcataacgattttgagagtaaaagtcagcaattcagttaatccaaatgttgcccaaaacagtatgatggtagcactaatggaactgaacaatgatactg |
500 |
Q |
| |
|
||||| || ||||| |||| ||||||| |||||||| || ||||| |||||||||| |||||||| |||| ||||||||||||||||||||||| || |
|
|
| T |
37079504 |
ggcatcacaattttcagagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattg |
37079603 |
T |
|
| Q |
501 |
tgatgaagataatgaaagcatgaaacattgcatgacatagattgtgtgcttttccttctgcttcacctggaacggctaaacatgctgctactgaagcagt |
600 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
37079604 |
tgatgaatataatgaaaacatggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagt |
37079703 |
T |
|
| Q |
601 |
gattataagtgttgaaac |
618 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
37079704 |
gattataagggttgaaac |
37079721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 618
Target Start/End: Complemental strand, 36971708 - 36971668
Alignment:
| Q |
578 |
aaacatgctgctactgaagcagtgattataagtgttgaaac |
618 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36971708 |
aaacatgctgctactgatgcagtgattataagtgttgaaac |
36971668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 158 - 631
Target Start/End: Original strand, 12493290 - 12493763
Alignment:
| Q |
158 |
tgatcaggtttactttcagttcgtgatgccnnnnnnngatatggataatgagaaatgtaccacaaggggttgctagttgatggtgatagaagaaaaagaa |
257 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| | || ||||||||||||| ||| || ||||||||||||| |||| |||| ||| | |
|
|
| T |
12493290 |
tgatcatgtttactttcagttcgtgatgccaaaaaaagataaaggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaactga |
12493389 |
T |
|
| Q |
258 |
gcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaacgtagttcactgataacagtgtagagaccagc |
357 |
Q |
| |
|
||| ||||||| |||||||||||| | |||||||| ||||||||||||| ||||||| ||||||||| |||||||| ||||||||||| |||| ||| |
|
|
| T |
12493390 |
gcatatataacgcaatcacaaccgcaataaaaatcaatgccataaccagagacacatttgacaaccaagtaagttcactaataacagtgtaaagactagc |
12493489 |
T |
|
| Q |
358 |
catgaaagccaaagataatgcaatgagagcgattccaagaagtggcataacgattttgagagtaaaagtcagcaattcagttaatccaaatgttgcccaa |
457 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||| ||||| || ||||||||||||||||| | |||||||||||| |||| |||||||||| |
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|
| T |
12493490 |
catgaaagccaaagataacgaaatgagagcgattccaagaagcggcatgaccattttgagagtaaaagttaccaattcagttaacccaagtgttgcccaa |
12493589 |
T |
|
| Q |
458 |
aacagtatgatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacattgcatgacatagattgtgtgcttttcctt |
557 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
12493590 |
aagagtatgatagtagcactaatggaactgaacaacgatattgtgatgaagataatgaaagcatggaacattgcatgacataggctgtgtgcttttcctt |
12493689 |
T |
|
| Q |
558 |
ctgcttcacctggaacggctaaacatgctgctactgaagcagtgattataagtgttgaaacaattgtaatgttt |
631 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12493690 |
ctgcttcacctggaacagctaaacatgctgctactgaagcagtgattataagtgttgaaacaattgtaaggttt |
12493763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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