View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13508_low_5 (Length: 424)

Name: NF13508_low_5
Description: NF13508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13508_low_5
NF13508_low_5
[»] chr7 (5 HSPs)
chr7 (132-374)||(33105763-33106007)
chr7 (132-231)||(12936019-12936118)
chr7 (130-229)||(49018477-49018576)
chr7 (16-101)||(33106033-33106118)
chr7 (129-171)||(23484922-23484963)
[»] chr8 (4 HSPs)
chr8 (131-231)||(32448400-32448500)
chr8 (128-230)||(6580333-6580435)
chr8 (128-230)||(27267049-27267158)
chr8 (132-230)||(32574464-32574561)
[»] chr4 (4 HSPs)
chr4 (132-233)||(27897449-27897550)
chr4 (128-230)||(29711981-29712086)
chr4 (130-229)||(35534377-35534474)
chr4 (132-230)||(1975467-1975564)
[»] chr6 (4 HSPs)
chr6 (132-233)||(12084445-12084547)
chr6 (132-229)||(2634760-2634855)
chr6 (132-207)||(1619800-1619873)
chr6 (131-182)||(22822666-22822716)
[»] chr5 (3 HSPs)
chr5 (128-227)||(21837373-21837470)
chr5 (128-179)||(42825021-42825072)
chr5 (128-179)||(8344569-8344620)
[»] scaffold0903 (1 HSPs)
scaffold0903 (128-179)||(130-181)
[»] scaffold0103 (1 HSPs)
scaffold0103 (132-229)||(5154-5249)
[»] chr3 (1 HSPs)
chr3 (128-200)||(30759509-30759578)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 132 - 374
Target Start/End: Complemental strand, 33106007 - 33105763
Alignment:
Q  132 actatataggacaatctttgtcccttttgttgaccattttgcccttatggaaggg--cattttcgtaaattagtaatttctgcttttcacctata-tata 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||| ||||    
T  33106007 actatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggggcattttcgtaaattagtaatttctgcttttcacacataatata 33105908  T
Q  229 tgtgttgatttatggtgagtagcctcttccgtttctttttctgcgtgctttagtgtcgtcggaggtgaagagcaaggggttgcgttttctcatcaaaggt 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33105907 tgtgttgatttatggtgagtagcctcttccgtttctttttctgcgtgctt-agtgtcgtcggaggtgaagagcaaggggtcgcgttttctcatcaaaggt 33105809  T
Q  329 tggttttttatctttcatctgcttgcatgtttagattgttggtata 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33105808 tggttttttatctttcatctgcttgcatgtttagattgttggtata 33105763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 12936019 - 12936118
Alignment:
Q  132 actatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcacctatatatatgt 231  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  12936019 actatataggacaatctttgtccctttttttgaccattttgcccttatggaagggcattttcgtaaattagaaattcctccttttcacctatatatatgt 12936118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 49018477 - 49018576
Alignment:
Q  130 ttactatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcacctatatatat 229  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||    
T  49018477 ttactatataggacaatctttgtccctttttttgaccattttgcccttataggagggcattttcgtaaattagtaatttctccttttcacctatatatat 49018576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 33106118 - 33106033
Alignment:
Q  16 cttgctggttcagatacgaggaagcgaaggtggatcgaaacgctgtcgtttgagcctggaatatttacgtttgttttgtcttctac 101  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33106118 cttgctggttcagatacgaggaagcgaaggtggatcaaaacgctgtcgtttgagcctggaatatttacgtttgttttgtcttctac 33106033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 23484963 - 23484922
Alignment:
Q  129 tttactatataggacaatctttgtcccttttgttgaccatttt 171  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  23484963 tttactatataggacaatctttgt-cctttttttgaccatttt 23484922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 32448500 - 32448400
Alignment:
Q  131 tactatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcacctatatatatg 230  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||    
T  32448500 tactatgtaggacaatctttgtccctttttttgaccattttgcccttatggaagggcattttcgtaaattagaaattcctccttttcacctatatatatg 32448401  T
Q  231 t 231  Q
    |    
T  32448400 t 32448400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 6580435 - 6580333
Alignment:
Q  128 ctttactatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaattagtaatttctg-cttttcacctatata 226  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||||||    
T  6580435 ctttactatataggacaatctttgtcccttttttt-accattttgcccttatgaaagggcattttcgtaaattagtaatttctgtctttccccctatata 6580337  T
Q  227 tatg 230  Q
    ||||    
T  6580336 tatg 6580333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 27267049 - 27267158
Alignment:
Q  128 ctttactatataggacaatctttgtcccttttgttg-------accattttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcacc 220  Q
    |||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |     
T  27267049 ctttactatataggacaatctttgtccctttttttttttttttaccattttgcccttatggaagggcattttcgtaaattagtaatttctgcctttccca 27267148  T
Q  221 tatatatatg 230  Q
    ||||||||||    
T  27267149 tatatatatg 27267158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 32574561 - 32574464
Alignment:
Q  132 actatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcac-ctatatatatg 230  Q
    |||||||||||||||  |||||| |||| || ||||||||||||||||  | ||| ||||| |||||||||||||| |||| |||| | |||||||||||    
T  32574561 actatataggacaattcttgtccattttttttaccattttgcccttat--aggggtattttggtaaattagtaattgctgcctttctctctatatatatg 32574464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 27897550 - 27897449
Alignment:
Q  132 actatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcacctatatatatgt 231  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||   ||| ||||||||||||||    
T  27897550 actatataggacaatctttgtcccttttttggaccattttgcccttatagaagggcattttcgtaaattagtaatttctcactttgacctatatatatgt 27897451  T
Q  232 gt 233  Q
    ||    
T  27897450 gt 27897449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 29712086 - 29711981
Alignment:
Q  128 ctttactatataggacaatctttgtcccttttgtt--gaccattttgcccttatggaagggcattttcgtaaattagtaatttctg-cttttcacctata 224  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||||    
T  29712086 ctttactatataggacaatctttgtccctttttttttgaccattttgcccttatgaaagggcattttcgtaaattagtaatttctgcctttccccctata 29711987  T
Q  225 tatatg 230  Q
    ||||||    
T  29711986 tatatg 29711981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 35534377 - 35534474
Alignment:
Q  130 ttactatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcacctatatatat 229  Q
    |||||||||||||||||  ||||||||||| |||||||||||||| ||||  | ||| ||||| |||||||||||| |  ||| |||| |||||||||||    
T  35534377 ttactatataggacaattcttgtccctttttttgaccattttgcctttat--aggggtattttggtaaattagtaaatgttgcatttcccctatatatat 35534474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 1975564 - 1975467
Alignment:
Q  132 actatataggacaatctttgtcccttttgttg-accattttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcacctatatatatg 230  Q
    |||||||||||||||  |||||| |||| ||  || |||||||||||||||  ||  ||||| |||||||||||||| |||| |||  ||||||||||||    
T  1975564 actatataggacaattcttgtccatttttttttactattttgcccttatgg--ggttattttggtaaattagtaattgctgcctttgccctatatatatg 1975467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 12084547 - 12084445
Alignment:
Q  132 actatataggacaatctttgtcccttttgttgacc-attttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcacctatatatatg 230  Q
    ||||||||||||||||||||||| |||| ||  || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  12084547 actatataggacaatctttgtccttttttttttcccattttgcccttatggaaaggcattttcgtaaattagtaatttctccttttcacctatatatatg 12084448  T
Q  231 tgt 233  Q
    |||    
T  12084447 tgt 12084445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 2634855 - 2634760
Alignment:
Q  132 actatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcacctatatatat 229  Q
    ||||||||| |||||  |||||  |||| ||||| ||||||||||||  |||||| ||||| |||||||||||| |  ||| ||||||||||||||||    
T  2634855 actatatagaacaattgttgtctgtttttttgactattttgccctta--gaagggtattttggtaaattagtaaatcatgcctttcacctatatatat 2634760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 1619873 - 1619800
Alignment:
Q  132 actatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaattagtaatt 207  Q
    |||||||||||||||  |||||| |||| || ||||||||||||||||  | ||| ||||| ||||||||||||||    
T  1619873 actatataggacaattcttgtccattttttttaccattttgcccttat--aggggtattttggtaaattagtaatt 1619800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 22822716 - 22822666
Alignment:
Q  131 tactatataggacaatctttgtcccttttgttgaccattttgcccttatgga 182  Q
    |||||||||||||||| ||||||| |||| || |||||||||||||||||||    
T  22822716 tactatataggacaatttttgtccatttt-tttaccattttgcccttatgga 22822666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 21837373 - 21837470
Alignment:
Q  128 ctttactatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcacctatatat 227  Q
    |||||||||| |||| |||||| ||||||||| |  |||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||    
T  21837373 ctttactatagaggataatcttggtccctttttt--accattttgcccttatggaagggcattttcgtaaattacttatttatccttttcacctatatat 21837470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 42825072 - 42825021
Alignment:
Q  128 ctttactatataggacaatctttgtcccttttgttgaccattttgcccttat 179  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42825072 ctttactatataggacaatctttgtcccttttattgaccattttgcccttat 42825021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 8344569 - 8344620
Alignment:
Q  128 ctttactatataggacaatctttgtcccttttgttgaccattttgcccttat 179  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  8344569 ctttactatataggacaatctttgtcccttttattgaccattttacccttat 8344620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0903 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0903
Description:

Target: scaffold0903; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 181 - 130
Alignment:
Q  128 ctttactatataggacaatctttgtcccttttgttgaccattttgcccttat 179  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  181 ctttactatataggacaatctttgtcccttttattgaccattttgcccttat 130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 5154 - 5249
Alignment:
Q  132 actatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaattagtaatttctgcttttcacctatatatat 229  Q
    ||||||||| |||||  |||||  |||| ||||| ||||||||||||  |||||| ||||| |||||||||||| |  ||| ||||||||||||||||    
T  5154 actatatagaacaattgttgtctgtttttttgactattttgccctta--gaagggtattttggtaaattagtaaatcatgcctttcacctatatatat 5249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 30759509 - 30759578
Alignment:
Q  128 ctttactatataggacaatctttgtcccttttgttgaccattttgcccttatggaagggcattttcgtaaatt 200  Q
    |||||||||||||||||||| |||| |||||| |||||||||||||||||||  ||||| ||||| |||||||    
T  30759509 ctttactatataggacaatc-ttgt-cctttttttgaccattttgcccttat-taagggtattttagtaaatt 30759578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University