View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13509_low_1 (Length: 663)
Name: NF13509_low_1
Description: NF13509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13509_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 19 - 647
Target Start/End: Original strand, 45091935 - 45092582
Alignment:
| Q |
19 |
atactccatactgttaggaaattaactctagctgcgtgataaaatctgcaactcgaaaaacaaatgtgaannnnnnnn-cccgggcaaaatctcaatcta |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45091935 |
atactccatactgttaggagattaactctagctgcgtgataaaatgtgcaactcgaaaaacaaatgtgaatttttttttcccgggcaaaatctcaatcta |
45092034 |
T |
|
| Q |
118 |
atttcctactgttaattttactgcgtttgaaacctgacagacaatgttcatggttgttgtccttgggcccttcagatctggct---------------tc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45092035 |
atttcctactgttaattttactgcgtttgaaacctgacagacaatgttcatggttgttgtccttgggcccttcagatctggctaattttactctagcttc |
45092134 |
T |
|
| Q |
203 |
tgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaaagctccaaaagggttatgtcttttgg |
302 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45092135 |
tgctgtttgtttattttttagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaaagccccaaaagggttatgtcttttgg |
45092234 |
T |
|
| Q |
303 |
aacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaacaacttctttactcatccaccaactatca |
402 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45092235 |
aacaaagtagccattgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaacaacttctttactcatccaccaattatca |
45092334 |
T |
|
| Q |
403 |
aacatctggaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gatattattcgtaactggattggaaaaaagactgt |
499 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| || |
|
|
| T |
45092335 |
aacatctgaaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtcaaagatattatccataactggattggaaaaaagaccgt |
45092434 |
T |
|
| Q |
500 |
ggattctcattcttatattgccaggtttcgggtttgtaagaggttctatgaactgatgctagtttgttgttcttggtttggttatgtcattttgactttt |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45092435 |
ggattctcattcttatattgccaggtttcgggtttgtaagaggttgtacgaactgatgctagtttgttgttcttggtttggttatgtccttttgactttt |
45092534 |
T |
|
| Q |
600 |
gaaggatctatgtgtatgatcaactatgtttgtgttagtttttctctc |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45092535 |
gaaggatctatgtgtatgatcaactatgtttgtgttagtttttctctc |
45092582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 171 - 647
Target Start/End: Original strand, 24375849 - 24376328
Alignment:
| Q |
171 |
ttgttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
270 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24375849 |
ttgttgtccttgggcccttcagacctggcttctgttgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
24375948 |
T |
|
| Q |
271 |
acaaaaagctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattg |
370 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24375949 |
acaaaaagccccaaaagggttatgtcttttggaacaaagtagccagtgcatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattg |
24376048 |
T |
|
| Q |
371 |
caacaacttctttactcatccaccaactatcaaacatctggaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gat |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
24376049 |
caacaacttctttactcatccaccaactatcaaacatctggaaaatttggacaatgttgagaccgatgatagtcgaaatgtgcgaacagaagtcaaagat |
24376148 |
T |
|
| Q |
468 |
attattcgtaactggattggaaaaaagactgtggattctcattcttatattgccaggtttcgggtttgtaagaggttctatgaactgatgctagtttgtt |
567 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24376149 |
attatccgtaactggattggaaaaaagactgtggattctcattcttatattgccaggtttcggatttgtaagaggttgtatgaactgatgctagtttgtt |
24376248 |
T |
|
| Q |
568 |
gttcttggtttggttatgtcattttgacttttgaaggatctatgtgtatgatcaactatgtttgtgttagtttttctctc |
647 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24376249 |
gttcttggtttggttatgtccttttgacttttgaaggatctatgtgtatgatcaactatgtttgtgttagtttttctctc |
24376328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 171 - 647
Target Start/End: Original strand, 21781169 - 21781648
Alignment:
| Q |
171 |
ttgttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
270 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21781169 |
ttgttgtccttgggcccttcagatatggcttctgctgtttgtttattttatagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
21781268 |
T |
|
| Q |
271 |
acaaaaagctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattg |
370 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
21781269 |
acaaaaagccccaaaagagttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactagggaaacttacgaggctgacttccattg |
21781368 |
T |
|
| Q |
371 |
caacaacttctttactcatccaccaactatcaaacatctggaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gat |
467 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
21781369 |
caacaacctctttaatcatccaccaaccatcaaacatctggaaaatttggacaatgttgagaccaatgatagtcgaaatatgcgaacacaagtcaaagat |
21781468 |
T |
|
| Q |
468 |
attattcgtaactggattggaaaaaagactgtggattctcattcttatattgccaggtttcgggtttgtaagaggttctatgaactgatgctagtttgtt |
567 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
21781469 |
attatccgtaactggattggaaaaaagactttggattctcattcttatattgctaggtttcgggtttgtaagaggttgtatgaactaatgctagtttgtt |
21781568 |
T |
|
| Q |
568 |
gttcttggtttggttatgtcattttgacttttgaaggatctatgtgtatgatcaactatgtttgtgttagtttttctctc |
647 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21781569 |
gttcttggtttggttatgtccttttgacttttgaaggatctatgtgtatgattaactatgtttgtgttagtttttctctc |
21781648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 177 - 647
Target Start/End: Complemental strand, 9106259 - 9105788
Alignment:
| Q |
177 |
tccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaa |
276 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||| |||| | |||||||||||||||| |
|
|
| T |
9106259 |
tccttgggcccttcagatatggcttctgctgtttgtttatgttctagtttatgtctctgttttttctagtttaaggatgcatttttgttgtttgacaaaa |
9106160 |
T |
|
| Q |
277 |
agctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaacaa |
376 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9106159 |
atccccaaaagggttatgtcttttggaacaaagtagccaatgtatgttggcaacccatttatactaagaaagcttacgaggctgactcccattgcaacaa |
9106060 |
T |
|
| Q |
377 |
cttctttactcatccaccaactatcaaacatctggaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gatattatt |
473 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
|
|
| T |
9106059 |
cttctttactcatccactagctatcaaacatctggaaaaattggacaatgttgagaccaatgatagtcaaaatgtgcgaacacaagtcaaagatactatc |
9105960 |
T |
|
| Q |
474 |
cgtaactggattggaaaaaagactgtggattctcattcttatattgccaggtttcgggtttgtaagaggttctatgaactgatgctagtttgttgttctt |
573 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||| | |||||| |
|
|
| T |
9105959 |
tgtaactggattg--aaaaagagattggattctcattcttatattgctaggttccgagtttgtaagaggttgaatgaactgatgctagtttttcgttctt |
9105862 |
T |
|
| Q |
574 |
ggtttggttatgtcattttgacttttgaaggatctatgtgtatgatcaactatgtttgtgttagtttttctctc |
647 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9105861 |
ggtttggttatgtccttttggcttttgaacaatctctgtgtatgatcaactatgtttgtgttagtttttctctc |
9105788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 174 - 636
Target Start/End: Complemental strand, 11789024 - 11788561
Alignment:
| Q |
174 |
ttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgaca |
273 |
Q |
| |
|
|||||||||||| |||||||| ||| |||||||||| |||| |||||||||||||||||||||| ||| ||||||| ||||| ||| |||||||||| |
|
|
| T |
11789024 |
ttgtccttgggcgcttcagatatggtttctgctgttggttttatttctagtttatgtctttgtttatcctgttttaaggatgcacgctttttgtttgaca |
11788925 |
T |
|
| Q |
274 |
aaaagctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaa |
373 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||| |
|
|
| T |
11788924 |
aaaagacccaagagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagagactaaggaagcttccgaggctggcccccattgcaa |
11788825 |
T |
|
| Q |
374 |
caacttctttactcatccaccaactatcaaacatctggaaaatttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gatatt |
470 |
Q |
| |
|
||| ||| | |||||||||| || |||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||||||||| || ||| |
|
|
| T |
11788824 |
caatctctcttttcatccaccagctgtcaaacatctggaaaaattgtacaattttgagaccaatgatagtcgaattgtgcgaacacaagtcaaagaaatt |
11788725 |
T |
|
| Q |
471 |
attcgtaactggattggaaaaaagactgtggattctcattcttatattgccaggtttcgggtttgtaagaggttctatgaactgatgctagtttgttgtt |
570 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
11788724 |
atccgtaactggattggaaaaaagactgtggattctcttccttatattgccaggttccgggtttgtaagaggtcgaatgaagtgatgctagtttgttgtt |
11788625 |
T |
|
| Q |
571 |
cttggtttggttatgtcattttgacttttgaaggatctatgtgtatgatcaactatgtttgtgtta |
636 |
Q |
| |
|
||||||||||| ||||| |||| |||| ||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
11788624 |
cttggtttggt--tgtcactttggctttcgaacaatctatgtgtatgatcaactatgtatgtgtta |
11788561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 509
Target Start/End: Complemental strand, 22792983 - 22792942
Alignment:
| Q |
468 |
attattcgtaactggattggaaaaaagactgtggattctcat |
509 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
22792983 |
attatccgtaactggataggaaaaaagactttggattctcat |
22792942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 417 - 526
Target Start/End: Complemental strand, 32021239 - 32021127
Alignment:
| Q |
417 |
ttggacaatgttgagaccaatgatagtcgaaatgtgcgaacacaagtc---gatattattcgtaactggattggaaaaaagactgtggattctcattctt |
513 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32021239 |
ttggacaattttgagaccaatgatagttgaattgtgcgaacacaagtcaaagaaattatccgtaactggattggaaaaaagactgtggattctcattctt |
32021140 |
T |
|
| Q |
514 |
atattgccaggtt |
526 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
32021139 |
atatcgccaggtt |
32021127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 32021370 - 32021294
Alignment:
| Q |
241 |
tctggtttaaggctgcactcttgttgtttgacaaaaagctccaaaagggttatgtcttttggaacaaagtagccagt |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
32021370 |
tctggtttaaggctgcactctagttgtttgacaaaaagcaccatgagggttatgtcttttggaacaaagtatccagt |
32021294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University