View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13509_low_2 (Length: 329)

Name: NF13509_low_2
Description: NF13509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13509_low_2
NF13509_low_2
[»] chr4 (4 HSPs)
chr4 (23-315)||(7458119-7458411)
chr4 (23-315)||(7412040-7412333)
chr4 (244-311)||(13031387-13031454)
chr4 (240-311)||(7419368-7419439)
[»] scaffold0105 (5 HSPs)
scaffold0105 (47-311)||(3433-3697)
scaffold0105 (47-311)||(15580-15844)
scaffold0105 (47-311)||(35395-35659)
scaffold0105 (47-311)||(48995-49259)
scaffold0105 (47-311)||(9515-9779)
[»] scaffold0345 (1 HSPs)
scaffold0345 (47-311)||(3320-3584)
[»] scaffold1330 (1 HSPs)
scaffold1330 (47-250)||(1794-1997)
[»] scaffold0496 (1 HSPs)
scaffold0496 (46-178)||(2991-3123)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 23 - 315
Target Start/End: Original strand, 7458119 - 7458411
Alignment:
Q  23 ataatgctgattacgcaacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaa 122  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7458119 ataatgctgattacgcaacaaaggaagtaaagaagtatgataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacctcaatgaa 7458218  T
Q  123 aggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtc 222  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7458219 aggttggggattagcttttcgtgcatgtggagatatgctaatttttcttggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtc 7458318  T
Q  223 ccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatgatgt 315  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7458319 ccaaatgaaagagcgatacaatggaatcaacttgcaagaaagaaaatagggagctttgtgtatagttgcactgtgatgggatgttgatgatgt 7458411  T

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Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 23 - 315
Target Start/End: Original strand, 7412040 - 7412333
Alignment:
Q  23 ataatgctgattacgcaacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaa 122  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7412040 ataatgctgattacgcaacaaaggaagtaaagaagtatgataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacctcaatgaa 7412139  T
Q  123 aggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtc 222  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7412140 aggttggggattagcttttcgtgcatgtggagatatgctaatttttcttggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtc 7412239  T
Q  223 ccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatg-ttgatgatgt 315  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  7412240 ccaaatgaaagagcgatacaatggaatcaacttgcaagaaagaaaatagggagctttgtgtatagttgcactgtgatgggatgtttgatgatgt 7412333  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 13031387 - 13031454
Alignment:
Q  244 tggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 311  Q
    ||||||||||||||||||||| ||  ||||||||||||| |||  |||| ||||||||||||||||||    
T  13031387 tggaatcaacttgcgagaaagcaatcagggagctttgtgcataactgcactgtgatgggatgttgatg 13031454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 7419439 - 7419368
Alignment:
Q  240 acaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 311  Q
    |||||||||||| |||||||||||| ||  ||||||||||||| |||  |||| ||||||||||| ||||||    
T  7419439 acaatggaatcagcttgcgagaaagcaatcagggagctttgtgcataactgcactgtgatgggatattgatg 7419368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 311
Target Start/End: Complemental strand, 3697 - 3433
Alignment:
Q  47 aagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgc 146  Q
    ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||    
T  3697 aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagc 3598  T
Q  147 atgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatgg 246  Q
    ||| ||||||   ||| | ||||| ||||||||  || ||||| || ||   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||    
T  3597 atgcggagatcatctattatttcttggaggtcctgttattcatggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatgg 3498  T
Q  247 aatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 311  Q
    ||||  |||||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  3497 aatcggcttgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 3433  T

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Target: scaffold0105; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 311
Target Start/End: Complemental strand, 15844 - 15580
Alignment:
Q  47 aagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgc 146  Q
    ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||    
T  15844 aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagc 15745  T
Q  147 atgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatgg 246  Q
    ||| ||||||   ||| | ||||| ||||||||  || ||||| || ||   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||    
T  15744 atgcggagatcatctattatttcttggaggtcctgttattcatggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatgg 15645  T
Q  247 aatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 311  Q
    ||||  |||||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  15644 aatcggcttgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 15580  T

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Target: scaffold0105; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 311
Target Start/End: Original strand, 35395 - 35659
Alignment:
Q  47 aagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgc 146  Q
    ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||    
T  35395 aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagc 35494  T
Q  147 atgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatgg 246  Q
    ||| ||||||   ||| | ||||| ||||||||  || ||||| || ||   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||    
T  35495 atgcggagatcatctattatttcttggaggtcctgttattcatggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatgg 35594  T
Q  247 aatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 311  Q
    ||||  |||||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  35595 aatcggcttgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 35659  T

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Target: scaffold0105; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 311
Target Start/End: Original strand, 48995 - 49259
Alignment:
Q  47 aagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgc 146  Q
    ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||    
T  48995 aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagc 49094  T
Q  147 atgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatgg 246  Q
    ||| ||||||   ||| | ||||| ||||||||  || ||||| || ||   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||    
T  49095 atgcggagatcatctattatttcttggaggtcctgttattcatggtggaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatgg 49194  T
Q  247 aatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 311  Q
    ||||  |||||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  49195 aatcggcttgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 49259  T

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Target: scaffold0105; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 311
Target Start/End: Complemental strand, 9779 - 9515
Alignment:
Q  47 aagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgc 146  Q
    ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||    
T  9779 aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagc 9680  T
Q  147 atgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatgg 246  Q
    ||| ||||||   ||| | ||||| ||||||||  || ||||| ||  |   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||    
T  9679 atgcggagatcatctattatttcttggaggtcctgttattcatggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatgg 9580  T
Q  247 aatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 311  Q
    ||||  |||||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  9579 aatcggcttgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 9515  T

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Target: scaffold0345 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 311
Target Start/End: Complemental strand, 3584 - 3320
Alignment:
Q  47 aagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgc 146  Q
    ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||    
T  3584 aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagc 3485  T
Q  147 atgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatgg 246  Q
    ||| ||||||   ||| | ||||| ||||||||  || ||||| ||  |   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||    
T  3484 atgcggagatcatctattatttcttggaggtcctgttattcatggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatgg 3385  T
Q  247 aatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatg 311  Q
    ||||  |||||  ||||  ||  |||| | |||||| ||| ||| | ||||||||||||||||||    
T  3384 aatcggcttgcaggaaatcaatcagggggttttgtgcataattgtactgtgatgggatgttgatg 3320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1330 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1330
Description:

Target: scaffold1330; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 250
Target Start/End: Original strand, 1794 - 1997
Alignment:
Q  47 aagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgc 146  Q
    ||||||| |||||| ||||| |||| ||||||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||    
T  1794 aagtaaagaagtatgataaagacaacaactcttgggtcatcattggaagctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagc 1893  T
Q  147 atgtggagatatgctaatttttctgggaggtcccattcttcattgtagaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatgg 246  Q
    ||| ||||||   ||| | ||||| ||||||||  || ||||| ||  |   ||| ||||||||||||||||| ||||||||||| ||| |  |||||||    
T  1894 atgcggagatcatctattatttcttggaggtcctgttattcatggtgcaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatgg 1993  T
Q  247 aatc 250  Q
    ||||    
T  1994 aatc 1997  T

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Target: scaffold0496 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 2991 - 3123
Alignment:
Q  46 gaagtaaaaaagtataataaaaacaataactcttgggttaccattggaagatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtg 145  Q
    |||||||| |||||| ||||| |||| |||| |||||| | ||||||||| |||||||||||||| || ||  |||| ||||||||| |||| |||||      
T  2991 gaagtaaagaagtatgataaagacaacaactattgggtcatcattggaagctttcctgagcaagctacatcggtgaatggttggggactagcatttcgat 3090  T
Q  146 catgtggagatatgctaatttttctgggaggtc 178  Q
    ||||||||||||  ||| | ||||| |||||||    
T  3091 catgtggagataaactattatttcttggaggtc 3123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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