View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350R-Insertion-10 (Length: 430)

Name: NF1350R-Insertion-10
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350R-Insertion-10
NF1350R-Insertion-10
[»] chr2 (8 HSPs)
chr2 (8-430)||(38690691-38691121)
chr2 (129-206)||(38634158-38634235)
chr2 (284-325)||(37123625-37123666)
chr2 (391-428)||(38638071-38638108)
chr2 (287-324)||(14368415-14368452)
chr2 (391-428)||(38634025-38634062)
chr2 (285-325)||(34319813-34319853)
chr2 (287-327)||(44287863-44287903)
[»] chr6 (3 HSPs)
chr6 (287-327)||(6922630-6922670)
chr6 (286-327)||(7339566-7339607)
chr6 (287-324)||(12606722-12606759)
[»] chr3 (3 HSPs)
chr3 (285-324)||(51829556-51829595)
chr3 (287-327)||(41259949-41259989)
chr3 (287-325)||(11988929-11988967)
[»] chr1 (1 HSPs)
chr1 (287-325)||(2098817-2098855)
[»] chr8 (2 HSPs)
chr8 (287-327)||(19756424-19756464)
chr8 (293-327)||(8766817-8766851)
[»] chr7 (3 HSPs)
chr7 (285-327)||(45725119-45725161)
chr7 (287-327)||(23198521-23198561)
chr7 (287-327)||(37307731-37307771)
[»] chr4 (2 HSPs)
chr4 (284-318)||(3158556-3158590)
chr4 (287-327)||(50263986-50264026)
[»] scaffold0178 (1 HSPs)
scaffold0178 (287-323)||(9703-9739)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Complemental strand, 38691121 - 38690691
Alignment:
Q  8 aaaattaacatataagatatagataatgatggagtatcaagtaattggttcacttaactttaaatttgaaagaattgaagcaaatttgggtaattctaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38691121 aaaattaacatataagatatagataatgatggagtatcaagtaattggttcacttaactttaaatttgaaagaattgaagcaaatttgggtaattctaat 38691022  T
Q  108 tctctacctatagtctttgattgtataattggtttttataagttaacatagattcatagctatggactatatgtacacgtaaaaaggataaatcatgtga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38691021 tctctacctatagtctttgattgtataattggtttttataagttaacatagattcatagctatggactatatgtacacgtaaaaaggataaatcatgtga 38690922  T
Q  208 tctacatatggaaatataaaatatac------atataataaaatgcatagattttgcagggttgggcttcgaatc---cgggatatctcacttctccaca 298  Q
    ||||||||||||||||||||||||||      |||| ||||||||||||||||||||||||||||| |||| |||    |||||||| ||||||||||||    
T  38690921 tctacatatggaaatataaaatatacatggagatatcataaaatgcatagattttgcagggttgggattcgtatctggggggatatcccacttctccaca 38690822  T
Q  299 tataatgtatgtgaatctagccactaggcccactagattaaaagaagaaatctttgatatgatttgatatcttacctcaccatgatactatatttttcaa 398  Q
    |||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38690821 tataatgtatgtgaatctagccactagg-ctaatggattaaaagaagaaatctttgatatgatttgatatcttacctcaccatgatactatatttttcaa 38690723  T
Q  399 tttgaaaatcctttgatatgcttcatccttat 430  Q
    ||||||||||||||||||||||||||||||||    
T  38690722 tttgaaaatcctttgatatgcttcatccttat 38690691  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 38634235 - 38634158
Alignment:
Q  129 tgtataattggtttttataagttaacatagattcatagctatggactatatgtacacgtaaaaaggataaatcatgtg 206  Q
    ||||||||||| ||| |||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||| |||||    
T  38634235 tgtataattggatttcataaattaacatagactcatagctatggactatttgtacatgtaaaaaggataaatgatgtg 38634158  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 37123625 - 37123666
Alignment:
Q  284 tctcacttctccacatataatgtatgtgaatctagccactag 325  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  37123625 tctcacttctccacacataatgtgtgtgaatctagccactag 37123666  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 38638108 - 38638071
Alignment:
Q  391 tttttcaatttgaaaatcctttgatatgcttcatcctt 428  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  38638108 tttttcaatttcaaaatcctttgatatgcttcatcctt 38638071  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 14368452 - 14368415
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccacta 324  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  14368452 cacttctccacacataatgtgtgtgaatctagccacta 14368415  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 38634062 - 38634025
Alignment:
Q  391 tttttcaatttgaaaatcctttgatatgcttcatcctt 428  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  38634062 tttttcaattttaaaatcctttgatatgcttcaccctt 38634025  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 34319853 - 34319813
Alignment:
Q  285 ctcacttctccacatataatgtatgtgaatctagccactag 325  Q
    |||||||||| ||| ||||||| ||||||||||||||||||    
T  34319853 ctcacttctctacacataatgtgtgtgaatctagccactag 34319813  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 44287863 - 44287903
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccactaggc 327  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  44287863 cacttctccacacataatgtgtgtgaatctagccaataggc 44287903  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 6922670 - 6922630
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccactaggc 327  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  6922670 cacttctccacatataatgtgtgtgaatctagccactaggc 6922630  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 7339566 - 7339607
Alignment:
Q  286 tcacttctccacatataatgtatgtgaatctagccactaggc 327  Q
    |||||||| |||| ||||||| ||||||||||||||||||||    
T  7339566 tcacttcttcacacataatgtgtgtgaatctagccactaggc 7339607  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 12606722 - 12606759
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccacta 324  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  12606722 cacttcttcacatataatgtgtgtgaatctagccacta 12606759  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 51829595 - 51829556
Alignment:
Q  285 ctcacttctccacatataatgtatgtgaatctagccacta 324  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  51829595 ctcacttctccacacataatgtatgtgaatctagccacta 51829556  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 41259989 - 41259949
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccactaggc 327  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  41259989 cacttctccacacataatgtgtgtgaatctagccactaggc 41259949  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 11988967 - 11988929
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccactag 325  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  11988967 cacttctccacacataatgtgtgtgaatctagccactag 11988929  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 2098817 - 2098855
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccactag 325  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  2098817 cacttctccacatataatgtgtgtgaatctagccactag 2098855  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 19756464 - 19756424
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccactaggc 327  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  19756464 cacttctccacacataatgtgtgtgaatctagccactaggc 19756424  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 327
Target Start/End: Complemental strand, 8766851 - 8766817
Alignment:
Q  293 tccacatataatgtatgtgaatctagccactaggc 327  Q
    |||||| ||||||||||||||||||||||||||||    
T  8766851 tccacaaataatgtatgtgaatctagccactaggc 8766817  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 45725161 - 45725119
Alignment:
Q  285 ctcacttctccacatataatgtatgtgaatctagccactaggc 327  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||    
T  45725161 ctcacttctctacacataatgtatgtaaatctagccactaggc 45725119  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 23198561 - 23198521
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccactaggc 327  Q
    |||||||||||| ||||||| ||| ||||||||||||||||    
T  23198561 cacttctccacacataatgtgtgtaaatctagccactaggc 23198521  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 37307731 - 37307771
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccactaggc 327  Q
    |||||||||||| ||||||| | ||||||||||||||||||    
T  37307731 cacttctccacaaataatgtgtttgaatctagccactaggc 37307771  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 3158590 - 3158556
Alignment:
Q  284 tctcacttctccacatataatgtatgtgaatctag 318  Q
    ||||||||||||| |||||||||||||||||||||    
T  3158590 tctcacttctccatatataatgtatgtgaatctag 3158556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 50264026 - 50263986
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccactaggc 327  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  50264026 cacttctccacacatgatgtgtgtgaatctagccactaggc 50263986  T

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Target: scaffold0178 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 9739 - 9703
Alignment:
Q  287 cacttctccacatataatgtatgtgaatctagccact 323  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  9739 cacttctccacacataatgtgtgtgaatctagccact 9703  T

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