View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350R-Insertion-11 (Length: 492)
Name: NF1350R-Insertion-11
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350R-Insertion-11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 125 - 460
Target Start/End: Complemental strand, 49254965 - 49254615
Alignment:
| Q |
125 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataattcgtagaa |
224 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49254965 |
ctgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49254866 |
T |
|
| Q |
225 |
aatatcgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaac---c |
321 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
49254865 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccagc |
49254766 |
T |
|
| Q |
322 |
accctctgtgtctttctctaacaaacctttatccatattttctagcccagaaaattgaa-------------tacattaatattgggatttgaatacgtt |
408 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
49254765 |
accctctctgtctttctctaacaaacctttttccatattttctagcccagaaaattgaatatgtgacaaagttacattaatatt-ggatttgaatacgtt |
49254667 |
T |
|
| Q |
409 |
ggtggaagttgagattattattgaaattggaataaacaatgttcagttcaca |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49254666 |
ggtggaagttgagattattattgaaattggaataaacaatgttcagttcaca |
49254615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 125 - 367
Target Start/End: Complemental strand, 49267227 - 49266985
Alignment:
| Q |
125 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataattcgtagaa |
224 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
49267227 |
ctgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaa |
49267128 |
T |
|
| Q |
225 |
aatatcgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaaccacc |
324 |
Q |
| |
|
||||| |||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
49267127 |
aatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcacc |
49267028 |
T |
|
| Q |
325 |
ctctgtgtctttctctaacaaacctttatccatattttctagc |
367 |
Q |
| |
|
||| ||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
49267027 |
ttctctgtctttctctaacaaacccttttccatattttctagc |
49266985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 95 - 275
Target Start/End: Original strand, 49274577 - 49274761
Alignment:
| Q |
95 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagca----atagctgtgctagaaagagaaagtttacacaaa |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
49274577 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaa |
49274676 |
T |
|
| Q |
191 |
tgaccaaccatcatcattgaaataattcgtagaaaatatcgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
275 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
49274677 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 125 - 311
Target Start/End: Complemental strand, 49271633 - 49271447
Alignment:
| Q |
125 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataattcgtagaa |
224 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49271633 |
ctgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49271534 |
T |
|
| Q |
225 |
aatatcgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgc |
311 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| |||| ||||| ||||| |
|
|
| T |
49271533 |
aatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 49256012 - 49255932
Alignment:
| Q |
8 |
aagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaagtgat |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49256012 |
aagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaatgat |
49255932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 49268982 - 49268907
Alignment:
| Q |
8 |
aagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaa |
83 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||| |||||| |
|
|
| T |
49268982 |
aagtttcaagctgtggatttggtagaagaccagaaagaaggattaggagttcaaatgaccaccactcaaggctgaa |
49268907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 49273738 - 49273706
Alignment:
| Q |
51 |
taggagctcaaatgaccaccactcaaagctgaa |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
49273738 |
taggagctcaaatgaccaccactcaaagctgaa |
49273706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University