View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350R-Insertion-12 (Length: 675)
Name: NF1350R-Insertion-12
Description: NF1350R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350R-Insertion-12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 9 - 675
Target Start/End: Complemental strand, 3916816 - 3916167
Alignment:
| Q |
9 |
aaattaagaatgttacactattgaaaatatatcaacatgtaatgaacttttccatttgacaagtgaagacaaaccgcataatcaatggcccaattggatc |
108 |
Q |
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| T |
3916816 |
aaattaaaaatgttaaactattgaaaagatatcaacatggaatgaacttgtccattttacaagtgaagacaaacc--------aatgacccaattggatc |
3916725 |
T |
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| Q |
109 |
acaccatatttctattcattcattagttattctatcctttaacttaattactttctatttattccttatgtaactaaaaactgctcaaccttaaacaaca |
208 |
Q |
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| T |
3916724 |
acactgtatttctattcattcattagttattctatcctttaacataattactttctatttattcctcatgtaacaaaaagcatgtcaaccttaaacaaca |
3916625 |
T |
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| Q |
209 |
taagtaaaaggaaactatgatccttaat-ctttaaaaccatggttgcaacttgctacacgtttttcagctacctt-aattaacttttgctaatatcaatt |
306 |
Q |
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| T |
3916624 |
taagtaaaaggaaactaaaatccttaatactttaaaaccatggtttcatcttgcaacacgtttttcagctactttcaattaagctttgttaaaatcaatt |
3916525 |
T |
|
| Q |
307 |
tcctcaagataaggtaaatttaattcacttccattgtaagaaatcaatagttctcatcactctagccttaagttctataaattggagtgattttggagac |
406 |
Q |
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| T |
3916524 |
tccttacgataatgtaattttaattcacttctattttaggaaatcaatagttctcatcactctagccttaagttctataaattggagtgattttggagaa |
3916425 |
T |
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| Q |
407 |
agtttattcatacaaacacaagagnnnnnnnnnnnnnnnnncttcaagagtaacttatatacactatggcaaaacccatcactggttcacttgttttagt |
506 |
Q |
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| T |
3916424 |
aatttattcatacaaacacgaga-----------aaaaaaacttcaagagtaacttatatacactatggcaaaaaccatcactggttcacttgttttagt |
3916336 |
T |
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| Q |
507 |
tctccttgttacggcgattctgaacggacacaccgaagctgtcggtagaggagctgaaccaccaaaggatggaagtgtttacgaacccgaagggtatgga |
606 |
Q |
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| T |
3916335 |
tctccttgttacggcgattctgaacggccacatcgaagctgccggtagaggagctgaaccaccaaaggatggaagtgtttacgaacccgaagggtatgga |
3916236 |
T |
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| Q |
607 |
ggttttccgttaccaccgccgccgacgtttataacttgcttgttttggtataaactttgtttgttttgg |
675 |
Q |
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| T |
3916235 |
ggttttccgttaccaccgccgccgacgtttataacttgcttgttttggtataaactttgtttgttttgg |
3916167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 530
Target Start/End: Original strand, 5398543 - 5398604
Alignment:
| Q |
466 |
tacactatggcaaaacccatcactggttcacttgttttagttctccttgttacggcgattctgaa |
530 |
Q |
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| T |
5398543 |
tacactatggcaaaatcca---ctgcttcacttgttttggttctccttgttgcggcgattttgaa |
5398604 |
T |
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